Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0708 ATGGCCGTTGAAACTAATGACTTCATTTTCCGATCAAAACTCCCCGATATTCAAATTCCCAATCACCTTCCCCTCCACGATTACGTTTTCCAAACAAACGCCCAATTCGGGTCACGCCCCTGTTTGATCGACGCCGCCACCGGTCACGTTTACTCATACAACGCCGTCCAGTCAACCGCCCGTCGGGTCGCCGGCGGCCTTCAAATTCTCGGAATTAAGAAGGGTGACGTCATCATGAATTTACTTCCCAACTCCCCGGAGTTCGTCTTCACCTTCCTCGCCGCCTCCTACGGCGGCGCCACCATGACCGCCGCCAACCCCTTTTACACGGCCGTCGAAATCGCCAAACAGGCCAAATCCGCCAATGTCAAATTGATCGTCACCATGGCTTGCTTCTACGATCGGGTTAAGGATTTGGCTGAAAACGGAGTCAAAATCGTGTGTGTTGACTTTGCGGTGGAGGGCTGTTTGCATTACTCTGTTTTGAGCGGCGCCGATGAAATCCAAGCGCCGGTGGCGGATTTCGCCTCCGACGACGTGGTGGCGCTGCCGTACTCCTCCGGCACCACCGGCCTGCCAAAGGGTGTGATGTTAACTCATAAAGGAATCGTCACCAGCGTTTCTCAACAGGTCGACGGCCAAAATCCCAACCTGTATTACCGCGGCGATGACGTCATCCTCTGTGTGTTGCCGCTCTTCCACATCTATTCTCTGAGTTCGATTCTGCTGTGTGGGCTACGCGCCGGCGCCGCGATTGTGTTAATGCAGAAATTCGAAATCGTTTCGGTTTTTCAATTGGTGGAGAAATACAGAGTTTCTGTCCTGCCAATTGTGCCGCCTATATTTTCGGCCATTGCGAAGTCGCCGGAGTTTGAGAAATACGACATGTCGTCGGTGAGGGTGCTGAAATCCGGCGGAGCGCCGCTGGTGAAGGAGGTGGAAGACGCGGTGAGGGGGAAGTTTCCGGGGGTGGTTATCGGGCAGGGGTACGGAATGACAGAGGCCGGTTCGGTTCTGACGATGAGTTTGGCCTTAGCGAAAGAACCGTTTCCGGTGAAGGATGGAGCCTGTGGGACGGTGATGAGAAATGCAGAGATGAAAATTGTTGACATCAAAACCGGCGTTTCGCTGCCGGCGAATTCCTCCGGTGAGATTTGGATAAGAGGGGACCAGATCATGAAAGGGTATTTGAATGATTTGGAGTCTACCAAGAACACTGTTGATAAAGAAGGATGGCTTCACACCGGCGACATTGGTTTCGTTGACGACGACGACGAGGTCTTCGTCGTTGACCGCCTTAAGGAACTTATCAAATGCAAGACGTTTCAGGTGGCGCCGGCGGAGCTTGAGGCTCTTCTGATCGCTCACCCTAACATATCAGATGCTGCTGTAATTGGCATGCCGGACGAGCAGGCCGGGGAAGTGCCAGTGGCGTTTGTGGTGAAGGAGAACGATGTTGCAATAATAGAAGAAGATGTAAAGCAATTCATATCCAAACAAGTGATATTTTATAAGAGACTAAAACGAGTTTTTTTTGTCAAAGCCATTCCAAAAGCTCCATCAGGTAAAATCCTTAGAAAAGAACTCAGAGCACAACTTGCTTCTGGTGCTTACAATTAA 1620 51.36 MAVETNDFIFRSKLPDIQIPNHLPLHDYVFQTNAQFGSRPCLIDAATGHVYSYNAVQSTARRVAGGLQILGIKKGDVIMNLLPNSPEFVFTFLAASYGGATMTAANPFYTAVEIAKQAKSANVKLIVTMACFYDRVKDLAENGVKIVCVDFAVEGCLHYSVLSGADEIQAPVADFASDDVVALPYSSGTTGLPKGVMLTHKGIVTSVSQQVDGQNPNLYYRGDDVILCVLPLFHIYSLSSILLCGLRAGAAIVLMQKFEIVSVFQLVEKYRVSVLPIVPPIFSAIAKSPEFEKYDMSSVRVLKSGGAPLVKEVEDAVRGKFPGVVIGQGYGMTEAGSVLTMSLALAKEPFPVKDGACGTVMRNAEMKIVDIKTGVSLPANSSGEIWIRGDQIMKGYLNDLESTKNTVDKEGWLHTGDIGFVDDDDEVFVVDRLKELIKCKTFQVAPAELEALLIAHPNISDAAVIGMPDEQAGEVPVAFVVKENDVAIIEEDVKQFISKQVIFYKRLKRVFFVKAIPKAPSGKILRKELRAQLASGAYN 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5273414 5275544 - Sed0021867.1 Sed07g0708 719572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0708 539 Pfam AMP-binding enzyme 31 397 IPR000873 -
Sed07g0708 539 Gene3D - 434 536 IPR045851 -
Sed07g0708 539 Gene3D - 2 433 IPR042099 -
Sed07g0708 539 FunFam Long-chain-fatty-acid--CoA ligase FadD 11 434 - -
Sed07g0708 539 Pfam AMP-binding enzyme C-terminal domain 448 523 IPR025110 -
Sed07g0708 539 FunFam 4-coumarate--CoA ligase 2 435 536 - -
Sed07g0708 539 CDD 4CL 19 529 - -
Sed07g0708 539 SUPERFAMILY Acetyl-CoA synthetase-like 22 535 - -
Sed07g0708 539 ProSitePatterns Putative AMP-binding domain signature. 183 194 IPR020845 -
Sed07g0708 539 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 6 530 - GO:0016405(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0708 Sed-Chr7:5273414 Sed12g2223 Sed-Chr12:32627305 1.20E-189 dispersed
Sed07g0708 Sed-Chr7:5273414 Sed07g0709 Sed-Chr7:5280572 9.20E-262 tandem
Sed05g1380 Sed-Chr5:26808599 Sed07g0708 Sed-Chr7:5273414 1.30E-207 wgd
Sed07g0708 Sed-Chr7:5273414 Sed09g1419 Sed-Chr9:38064399 8.00E-258 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0708 K01904 - csv:101218121 876.7