Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0709 ATGGCTGTTGAATCAAACCAAACACAGGAGTTCATTTACCGCTCAAAGCTCCCCGATATTGACATTCCCAATCAGCTTCCCCTCCATGATTACATTTTCGAAAACCAGGCCAAATTCGGGTCACGCCCCTGTTTGATCGACGCCGCCACCGGCCACGTTTACACTTACCTGGACGTGGAGCTAACTGCCCGTCGGGTTGCCGGTGGCCTTAACAGTCTCGGAATTAAGAAGGGCGATGTCGTCATGAATCTACTTCCCAACTCCCCGGAGTTCGCCTTCACCTTCCTCGCCGCCTCCTACCGCGGGGCCATCATGACCGCGGCCAACCCCTTTTACACGGCTGTCGAAATTGCCAAACAGGCCAAAGCCGCCAATGTCAAATTGATCGTCACCATGGCTTGCTTCTACGATCGGGTTAAGGATTTGGCCCAAAACGGAGTGAAGGTCGTGTGTGTTGATTTTGCGGTCGAGGGTTGTTTGCATTTCTCTGTTCTGAGTGGCGCCGATGAATTCGTAGCGACTCCGGCGGATTTTGCCTCGGATGACGTGGTGGCGCTGCCGTACTCCTCCGGCACCACGGGCTTGCCGAAGGGTGTGATGTTAACTCACAAAGGGTTAATCACGAGCGTTGCTCAACAAATGGACGGCCAAAATCCGAACCTGTATTACCATGGTGGCGACGTTATCCTGTGCGTGTTGCCCTTTTTCCACATCTATTCGCTCAATTCCATTCTGCTGTGTGGACTACGCGCGGGTGCTGCGATTTTGATAATGCAGAAATTCGAAATAGCAACGCTCTTACAATTGGTGGAGAAGTACAAAATTTCAGTCATGCCGATTGTGCCGCCCATATTTCTGGGCATTGCTAAGTCACCCGATTTTGATAAATACGACGTGTCGTCGGTGAGGGTACTGAAATCGGGTGGAGCCCCGTTGGGGAAGGAGCTCGAAGATGCCGTGAGAGACAAGTTTCCAAAGGCGGTTCTTGGACAAGGCTACGGAATGACGGAGGCCGGTCCGGTTCTAACCATGAGTTTGGCTTTTGCGAAAGAACCACTCCCCGTGAAAGCCGGAGCCTGCGGGACGGTGGTCCGGAACGCAGAGATGAAGATCGTTGACACAGAAACGGGCGCCTCGTTGCCGCCAAATACGGCCGGAGAGATTTGTATCAGAGGAGACCAAATCATGAAGGGTTATTTGAATGATTTGGAGTCCACCAAGAGGACTGTGGATAAAGAAGGATGGCTGCACACTGGCGACATCGGCTTCATTGACGACGACGACGAGCTCTTCATCGTCGACCGCCTGAAGGAACTCATAAAATTCAAGGCTTTTCAGGTGGCACCGGCGGAGCTTGAGGCCCTTCTGCTCACCCATCCTAAACTGTCTGATGCTGCTGTTATTGGTATGCCCGACGAGCAAGCTGGGGAAGTGCCGGTGGCGTTTGTGGTAAAACCAAACGACGACACAATCGCAGAAGAAGATGTAAAGCAATTCATATCCAAACAAGTTATATTTTATAAGAGACTAAAACGTGTGTTTTTTGTCGATGTCATTCCGAAAGCTCCATCAGGCAAAATCCTCAGAAAAGAGCTCAGAGCAAAGTTGGCTTCCGGAACATACAATTAA 1629 51.2 MAVESNQTQEFIYRSKLPDIDIPNQLPLHDYIFENQAKFGSRPCLIDAATGHVYTYLDVELTARRVAGGLNSLGIKKGDVVMNLLPNSPEFAFTFLAASYRGAIMTAANPFYTAVEIAKQAKAANVKLIVTMACFYDRVKDLAQNGVKVVCVDFAVEGCLHFSVLSGADEFVATPADFASDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQMDGQNPNLYYHGGDVILCVLPFFHIYSLNSILLCGLRAGAAILIMQKFEIATLLQLVEKYKISVMPIVPPIFLGIAKSPDFDKYDVSSVRVLKSGGAPLGKELEDAVRDKFPKAVLGQGYGMTEAGPVLTMSLAFAKEPLPVKAGACGTVVRNAEMKIVDTETGASLPPNTAGEICIRGDQIMKGYLNDLESTKRTVDKEGWLHTGDIGFIDDDDELFIVDRLKELIKFKAFQVAPAELEALLLTHPKLSDAAVIGMPDEQAGEVPVAFVVKPNDDTIAEEDVKQFISKQVIFYKRLKRVFFVDVIPKAPSGKILRKELRAKLASGTYN 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5280572 5282612 - Sed0023294.1 Sed07g0709 719573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0709 542 CDD 4CL 22 532 - -
Sed07g0709 542 SUPERFAMILY Acetyl-CoA synthetase-like 8 538 - -
Sed07g0709 542 Gene3D - 5 436 IPR042099 -
Sed07g0709 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 533 - GO:0016405(PANTHER)
Sed07g0709 542 Pfam AMP-binding enzyme 34 400 IPR000873 -
Sed07g0709 542 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Sed07g0709 542 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Sed07g0709 542 FunFam 4-coumarate--CoA ligase 2 438 539 - -
Sed07g0709 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 437 - -
Sed07g0709 542 Gene3D - 437 538 IPR045851 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0287 Sed-Chr4:2140265 Sed07g0709 Sed-Chr7:5280572 9.10E-116 dispersed
Sed04g2599 Sed-Chr4:38469866 Sed07g0709 Sed-Chr7:5280572 1.10E-214 dispersed
Sed05g1380 Sed-Chr5:26808599 Sed07g0709 Sed-Chr7:5280572 3.10E-217 dispersed
Sed06g1758 Sed-Chr6:42324381 Sed07g0709 Sed-Chr7:5280572 4.10E-116 dispersed
Sed07g0709 Sed-Chr7:5280572 Sed09g1419 Sed-Chr9:38064399 3.20E-278 dispersed
Sed07g0708 Sed-Chr7:5273414 Sed07g0709 Sed-Chr7:5280572 9.20E-262 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0709 K01904 - csv:101218121 947.962