Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0721 ATGATCGGCGACAAGAAACCCACCACACTTTGCCAATCTTCCTACAGTTCTCTATACACCAATCCCCTCACCGACCTCCGCCACAACCGCTGCCGCAGCGACGGCGGATTCCGGCAAGGCAAAGAAAACTCGCCGCCCAACACGGCGGAAAAACAGAGCGATGAAAGCAGAGTGCTCTGCGACAAAGAAAATGCGATTCCCAGTAATGGGTCTAAGAAACTTGGAGATTTGAAGTCGTTTTCCACTGGGAAGTCGTTGAAGCCTTCGTCGCTTCATCTGTGTATGCAGATGAATGAACCGGATAAGGTTTTTGCGACGAAGTTGTGGGACGGTACTGATTCGGAACATTCGAGCTCGTTGAAGATTTGGGACTTTTCGGATTCGGAAGCTGCTCCGGCTTCTTCTTGGTCTACTTTGCCTAACAGGTCGTTGTTGTGTCGGCCATTGCCTGTGGATGTGGGGAGATGTACCTGTGTCATTGTGAAGGAAAAATCACCAGATGGGCTTCATGGTGGTGCCTTCTATTCTCTATACACCAATGAAGGGAAGGGAAGGCAGGATCGGAAGTTGGCAGTGGCTCGGCATCGACGACGAAATGGGAGATCGGAGTATAAAATAGCTCAGAGTGCAAGAGGGATATTGTGCAATGCAGATGATAGTTTTGTTGGATCCATGACCACAAACCTTGTTGGTTCAAAATACCATATATGGGATCAGGGGAGCCGTCTTAAATCGACCCCGAGCAAGCCAAAATCGCTCCACGCTGCAGTAACATTCATGCCTACTATAACCACTTGGACAGGCAGTCATAGAAGCATTAAGGCTTTCATCCCCAATCATCAATCAATGCAGCTGAAAAACACCAATCAGGGGCAGCATAAAGCAGGGCTGCCAAGAGAGAGGGATGAAGAGAAAGCCAAAGTCCACCAGCTTGTTTCTAGAGTTCCTCAATACAACAAGATTTCCAAGCAATATGAATTGGACTTTAGAGACAGAGGAAGGGCAGTTTCAGGTCTCATGATCCAACCCTCTGTCAAGAATTTTCAGTTAACTTTAGAGGAAAATGGCAAGCCAACAATTCTTCAACTTGGAAGGATTGGGAAGTCTAAGTATGTGATGGATTATAGATATCCATTGACAGGTTATCAGGCATTTTGCATATGCCTAGCTTCCATAGATTCAAAGCTTTGTTGCTCAGTATGA 1203 46.72 MIGDKKPTTLCQSSYSSLYTNPLTDLRHNRCRSDGGFRQGKENSPPNTAEKQSDESRVLCDKENAIPSNGSKKLGDLKSFSTGKSLKPSSLHLCMQMNEPDKVFATKLWDGTDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLHGGAFYSLYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHIWDQGSRLKSTPSKPKSLHAAVTFMPTITTWTGSHRSIKAFIPNHQSMQLKNTNQGQHKAGLPRERDEEKAKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQPSVKNFQLTLEENGKPTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5390156 5393409 - Sed0009506.1 Sed07g0721 719585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0721 400 SUPERFAMILY Tubby C-terminal domain-like 133 398 IPR025659 -
Sed07g0721 400 Gene3D Tubby Protein; Chain A 138 399 IPR025659 -
Sed07g0721 400 PANTHER TUBBY-RELATED 66 398 - -
Sed07g0721 400 Pfam Tub family 145 394 IPR000007 -
Sed07g0721 400 PRINTS Tubby superfamily signature 336 352 IPR000007 -
Sed07g0721 400 PRINTS Tubby superfamily signature 356 375 IPR000007 -
Sed07g0721 400 PRINTS Tubby superfamily signature 221 245 IPR000007 -
Sed07g0721 400 PRINTS Tubby superfamily signature 377 399 IPR000007 -
Sed07g0721 400 MobiDBLite consensus disorder prediction 30 58 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0721 Sed-Chr7:5390156 Sed13g0604 Sed-Chr13:4196530 2.10E-13 dispersed
Sed07g0721 Sed-Chr7:5390156 Sed07g0722 Sed-Chr7:5390156 1.70E-228 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39024 PF01167 Tub 1.20E-43 CL0395 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0721 K19600 - csv:101216780 699.893