Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0722 ATGATCGGCGACAAGAAACCCACCACACTTTGCCAATCTTCCTACAGTTCTCTATACACCAATCCCCTCACCGACCTCCGCCACAACCGCTGCCGCAGCGACGGCGGATTCCGGCAAGGCAAAGAAAACTCGCCGCCCAACACGGCGGAAAAACAGAGCGATGAAAGCAGAGTGCTCTGCGACAAAGAAAATGCGATTCCCAGTAATGGGTCTAAGAAACTTGGAGATTTGAAGTCGTTTTCCACTGGGAAGTCGTTGAAGCCTTCGTCGCTTCATCTGTGTATGCAGATGAATGAACCGGATAAGGTTTTTGCGACGAAGTTGTGGGACGGTACTGATTCGGAACATTCGAGCTCGTTGAAGATTTGGGACTTTTCGGATTCGGAAGCTGCTCCGGCTTCTTCTTGGTCTACTTTGCCTAACAGGTCGTTGTTGTGTCGGCCATTGCCTGTGGATGTGGGGAGATGTACCTGTGTCATTGTGAAGGAAAAATCACCAGATGGGCTTCATGGTGGTGCCTTCTATTCTCTATACACCAATGAAGGGAAGGGAAGGCAGGATCGGAAGTTGGCAGTGGCTCGGCATCGACGACGAAATGGGAGATCGGAGTATAAAATAGCTCAGAGTGCAAGAGGGATATTGTGCAATGCAGATGATAGTTTTGTTGGATCCATGACCACAAACCTTGTTGGTTCAAAATACCATATATGGGATCAGGGGAGCCGTCTTAAATCGACCCCGAGCAAGCCAAAATCGCTCCACGCTGCAGTAACATTCATGCCTACTATAACCACTTGGACAGGCAGTCATAGAAGCATTAAGGCTTTCATCCCCAATCATCAATCAATGCAGCTGAAAAACACCAATCAGCAGGGGCAGCATAAAGCAGGGCTGCCAAGAGAGAGGGATGAAGAGAAAGCCAAAGTCCACCAGCTTGTTTCTAGAGTTCCTCAATACAACAAGATTTCCAAGCAATATGAATTGGACTTTAGAGACAGAGGAAGGGCAGTTTCAGGTCTCATGATCCAACCCTCTGTCAAGAATTTTCAGTTAACTTTAGAGGAAAATGGCAAGCCAACAATTCTTCAACTTGGAAGGATTGGGAAGTCTAAGTATGTGATGGATTATAGATATCCATTGACAGGTTATCAGGCATTTTGCATATGCCTAGCTTCCATAGATTCAAAGCTTTGTTGCTCAGTATGA 1206 46.77 MIGDKKPTTLCQSSYSSLYTNPLTDLRHNRCRSDGGFRQGKENSPPNTAEKQSDESRVLCDKENAIPSNGSKKLGDLKSFSTGKSLKPSSLHLCMQMNEPDKVFATKLWDGTDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLHGGAFYSLYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHIWDQGSRLKSTPSKPKSLHAAVTFMPTITTWTGSHRSIKAFIPNHQSMQLKNTNQQGQHKAGLPRERDEEKAKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQPSVKNFQLTLEENGKPTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5390156 5393409 - Sed0009506.2 Sed07g0722 719586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0722 401 Gene3D Tubby Protein; Chain A 138 400 IPR025659 -
Sed07g0722 401 PRINTS Tubby superfamily signature 357 376 IPR000007 -
Sed07g0722 401 PRINTS Tubby superfamily signature 378 400 IPR000007 -
Sed07g0722 401 PRINTS Tubby superfamily signature 221 245 IPR000007 -
Sed07g0722 401 PRINTS Tubby superfamily signature 337 353 IPR000007 -
Sed07g0722 401 PANTHER TUBBY-RELATED 66 399 - -
Sed07g0722 401 SUPERFAMILY Tubby C-terminal domain-like 133 399 IPR025659 -
Sed07g0722 401 Pfam Tub family 145 395 IPR000007 -
Sed07g0722 401 MobiDBLite consensus disorder prediction 30 58 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0722 Sed-Chr7:5390156 Sed13g0604 Sed-Chr13:4196530 1.80E-12 dispersed
Sed07g0721 Sed-Chr7:5390156 Sed07g0722 Sed-Chr7:5390156 1.70E-228 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39025 PF01167 Tub 5.40E-44 CL0395 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0722 K19600 - csv:101216780 695.656