Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0727 ATGATTATCACCGTGAAGGATTCGACGATGGTGACTCCGGCGGAGGCGACGCCGCGCCGGAGTCTCTGGAACTCCAACGTCGACCTTGTGGTGCCGAGTATGCACACGCCGAGCGTCTACTTCTACCGGCCGACCGGCGATTCCGATTTCTTCGACGGTCAGGTTCTTAAGCAAGGTCTCAGCAAGGCGCTGGTGCCGTTCTATCCAATGGCCGGTCGGTTGCGTCGCGATGAAGACGGTCGTGTCGAGATCGACTGTAATGCCGAAGGCGTTCTCCTTGTCGAAGCCGAGACCACGGCGGTGGTCGACGATTTCGGTGATTTCGCGCCGACGTTGCAGCTTCGCCAGCTTATTCCGGCCGTCGATTACTCCGCCGGAATCGAGTCCTATCCGTTGTTGGTGTTACAGGTGACGCACTTCAAATGCGGCGGCGTTTCCCTCGGCGTCGGAATGCAACACCACGCGGCGGACGGCTTCTCCGGTCTCCACTTCGTCAACACCTGGTCCGACATGTCGCGCGGCCTCGACCTCAAGCTCTCCCCCTTTATCGACCGCTCCCTCCTCCGCGCCAGGGACCCACCTCAACCGCTCTTCCGACATGTCGAGTACCAACCGGCCCCGCCCATGAAAACCCCGGTCCAACCCGACCCAGCCGGGACCAGCGTCTCCATCTTCAAATTCAGCCGCGACCAGCTCAACCTCCTCAAAGCCAAATCCAAAGAAAACGGCAACGCCACAAACTACAGCTCCTACGAGATGCTCTCCGGCCACGTCTGGCGGTGCACGTGCATGGCGCGTGACCTCCCCGAGGATCAGGACACCAAGCTCTACATCGCCACCGACGGCCGTGCCCGGCTCCGCCCGCCGCTTCCCAACGGCTACTTCGGCAACGTCATCTTCACGACGACGCCGATCGCCGTCGCCGGCGATCTGATGTCGAATCCCACGTGGTTAGCCGCCGGCAAGATCCACGACGCCTTAATTCGGATGGACAACGAGTATTTGAGATCGGCGTTGGACTATCTTGAGATTCAGCCGGACATATCGGCGTTGGTCCGAGGCGCCCATACTTTCCGGTGCCCGAATTTGGGGATCACGAGCTGGGCTCGGCTGCCGATTCACGACGCCGATTTCGGGTGGGGGCGGCCGATTTTTATGGGCCCCGGCGGAATCGCGTACGAGGGATTGTCGTTTATAATTCCGAGTGCTTCCGGCGACGGCAGCATGTCGGTGGCGATTTCGCTGCAGACTCGACATATGAAGGTGTTTGAGAAGATATTTTTTGATATTTGA 1293 59.78 MIITVKDSTMVTPAEATPRRSLWNSNVDLVVPSMHTPSVYFYRPTGDSDFFDGQVLKQGLSKALVPFYPMAGRLRRDEDGRVEIDCNAEGVLLVEAETTAVVDDFGDFAPTLQLRQLIPAVDYSAGIESYPLLVLQVTHFKCGGVSLGVGMQHHAADGFSGLHFVNTWSDMSRGLDLKLSPFIDRSLLRARDPPQPLFRHVEYQPAPPMKTPVQPDPAGTSVSIFKFSRDQLNLLKAKSKENGNATNYSSYEMLSGHVWRCTCMARDLPEDQDTKLYIATDGRARLRPPLPNGYFGNVIFTTTPIAVAGDLMSNPTWLAAGKIHDALIRMDNEYLRSALDYLEIQPDISALVRGAHTFRCPNLGITSWARLPIHDADFGWGRPIFMGPGGIAYEGLSFIIPSASGDGSMSVAISLQTRHMKVFEKIFFDI 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5418562 5423293 - Sed0019242.1 Sed07g0727 719591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0727 430 FunFam Spermidine hydroxycinnamoyl transferase 1 203 - -
Sed07g0727 430 Gene3D - 211 430 IPR023213 -
Sed07g0727 430 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 421 IPR050317 GO:0016747(PANTHER)
Sed07g0727 430 Gene3D - 1 205 IPR023213 -
Sed07g0727 430 FunFam Tryptamine hydroxycinnamoyl transferase 208 428 - -
Sed07g0727 430 Pfam Transferase family 2 425 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2060 Sed-Chr3:14739328 Sed07g0727 Sed-Chr7:5418562 5.60E-28 dispersed
Sed07g0727 Sed-Chr7:5418562 Sed14g0708 Sed-Chr14:7081507 3.50E-86 dispersed
Sed07g0727 Sed-Chr7:5418562 Sed07g0728 Sed-Chr7:5444868 2.70E-187 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0727 K13065 - csv:101214857 807.749