Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0730 ATGGGCATATATTTGAGTTCCCCCAAAACAGAAAAGGCCTCGGATGATGGTGAGAACGAGATACTTCGATATGGCCTATCCTCTATGCAAGGGTGGCGTGCAACTATGGAAGACGCTCATGCAGCCTGTCTAGATTTGGACACGTCAACATCTTTCTTTGGCGTTTATGATGGTCATGGAGGTAAAGCAGTTTCTAAGTTCTGTGCCAAGTATCTACATCGACAGGTGCTCAAGCAAGAAACATACATGGCTGGAGATTTGGGAACTTCATTACAGAAGGCCTTTCTCAGAATGGATGAGATGATGCGTGGACAAAGAGGATGGAGAGAATTAGCTATTTTGGGAGATAAAATGGACAAGATTTCTGGTATGATAGAAGGATTTATATGGTCACCCAAGGGTAATAATAGTGAAGCTAACAACCAAGTCGACGATTGGCCTCCGGAGGAGGGACCTCACTCTGACTTTCATGGACCAAATGCTGGAAGCACAGCTTGTGTTGCCATCGTACGAAACAGCCAACTCGTCGTGGCAAATGCTGGTGATTCTCGCTGTGTCATTTCCAGAAAGGGCCAGGCATATAATCTATCTAAAGACCACAAGCCTGATCTTGAGGTTGAGAAGGACAGGATTCTGAAAGCCGGTGGTTTCATCCGAGTTGGTCGTGTCAATGGAAGTCTCAACTTGGCACGGGCTATAGGAGACATGGAATTTAAGCAGAATAAAAGTATGCCCCCAGAGAAGCAAATTGTAACTGCATACCCAGATGTAACAACGGCGGAGCTTTGTGAGGACGACGAATTTCTTGTTATTGCTTGCGATGGGATTTGGGATTGCATGTCCAGCCAACAATTGGTTGACTACATTGGAGATCAACTCAAGACGGAAAGTAAACTGTCTGTTATTTGTGAGAGAGTATTTGACAGATGCTTGGCACCCTCGGCTGGTGGAGAAGGATGTGACAACATGACTATGATCTTGGTTCAGTTCAAGAAACCCTTCAACCCAAATGCTGCTTCTGCTAGGGGGCTGCCTTCATCGTCCGATCGACCATCTTCGTCTGATCCGAGTGAAGGCTCTTCTACGGCTGAATAG 1095 46.03 MGIYLSSPKTEKASDDGENEILRYGLSSMQGWRATMEDAHAACLDLDTSTSFFGVYDGHGGKAVSKFCAKYLHRQVLKQETYMAGDLGTSLQKAFLRMDEMMRGQRGWRELAILGDKMDKISGMIEGFIWSPKGNNSEANNQVDDWPPEEGPHSDFHGPNAGSTACVAIVRNSQLVVANAGDSRCVISRKGQAYNLSKDHKPDLEVEKDRILKAGGFIRVGRVNGSLNLARAIGDMEFKQNKSMPPEKQIVTAYPDVTTAELCEDDEFLVIACDGIWDCMSSQQLVDYIGDQLKTESKLSVICERVFDRCLAPSAGGEGCDNMTMILVQFKKPFNPNAASARGLPSSSDRPSSSDPSEGSSTAE 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5471313 5477506 + Sed0016050.1 Sed07g0730 719594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0730 364 CDD PP2Cc 23 330 IPR001932 -
Sed07g0730 364 Gene3D - 1 331 IPR036457 -
Sed07g0730 364 PANTHER PROTEIN PHOSPHATASE 2C 20 331 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Sed07g0730 364 ProSiteProfiles PPM-type phosphatase domain profile. 23 330 IPR001932 -
Sed07g0730 364 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Sed07g0730 364 Pfam Protein phosphatase 2C 158 315 IPR001932 -
Sed07g0730 364 MobiDBLite consensus disorder prediction 340 364 - -
Sed07g0730 364 SUPERFAMILY PP2C-like 3 332 IPR036457 -
Sed07g0730 364 SMART PP2C_4 13 328 IPR001932 -
Sed07g0730 364 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169(InterPro)
Sed07g0730 364 MobiDBLite consensus disorder prediction 338 364 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0730 Sed-Chr7:5471313 Sed13g1955 Sed-Chr13:24458326 4.10E-157 dispersed
Sed07g0730 Sed-Chr7:5471313 Sed11g0178 Sed-Chr11:1590520 2.20E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0730 K17499 - csv:101214132 657.907