Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0739 ATGAATCTTCTTGGTATTTTAGTCCCCATGTGGGTTTTGTTCCCAATAATTGATGCCAGACCACAGCTTGTTGGGGTTTCAATTTCTAGGACTGTTTTTGCTTCTCAGAAACAACCCTTTTCTCACATTGTGGCAAAAATGGAAGCTCAATCCCCAGGAGTTGTTGCTGAGGTTAGAGTTGTTCACCACCAGGATTTGAACAAGAGTATTCTCATAGCATTGATTGTTTCTACCACACTTCTTGGAGCTATATTGTTGTCCCTTTTGTGCTTTTGGATATGTCGTCGAAAATCGTCGAATCTTGATGATGGAGAATGTCAAAAGAATTTGGAGGCTTCGAAAGGGATGACAATAAATCCCATCAAATCTAGATTTAACTCCTTGAGGTTGGCTAATTTCAAAGGCTCGGTTTCCACGATTGACTATAAACTGTTGGAAGCAGCTACTGATCACTTCAGCAAAAGCAATGTTTTGGGAGAAGGCGGTACCGGGCATGTTTACAAAGCCCGGTTCAATGATAAAATGCTGGCGGCTGTGAAGAGAATAGAATATGGAGGACCAGATGTTGAAAGAGAATTTGAGAATGAGGTGAACTGGCTGTGTAAAATTCGACATCAAAATGTAATCAAACTCTTGGGACATTGCATTCATGGCGAAACACGGTTTCTTGTTTATGAGATGATGCAAAATGGATCTTTGGAGTCTCAATTGCACGGACCTTCTCATGGATCGGCTTTAACTTGGCATCTTCGAATGAAGATCGCTGTTGACATTGCAAGAGGATTGGAGTATCTTCACGAGCACCGAAGTCCTCCAGTCGTTCATCGAGATTTGAAATCATCAAATATCCTTCTAGATTCAGACTTTAATGCCAAGCTCTCTGACTTTGGCCTTACTGTAAACTTGGGAGCTCAAAATAAAAACATAAAGCTCTCTGGAACTTTGGGATATGTCGCCCCGGAATACCTTTTAGATGGTAAACTAACTGATAAAAGTGACGTCTATGCTTTTGGAGTTGTTCTTTTAGAGCTTATGACCGGGAAAAAGCCTGTCGAAAAGATGGGACCTTCTCAATCCCAATCTCTAGTCTCATGGGCGATCCCGCAGTTCAGTGACAGATCAAAGCTCCCGAAAATTGTCGATCCCGTGATAAGGGACACGATGGATTTGAAGCACTTATACCAAGTAGCTGCTGTAGCTGTGCTATGTGTACAATCAGAACCGAGCTACCGACCATTAGTTACCGATGTTCTGCATTCCCTCATCCCTCTTTTACCTGTAGAGCTTGGAGGATCACTACGAATGACAGACCCACTTCATCCAAAAGTGCCTTCGTCGACTCGCTAA 1347 42.54 MNLLGILVPMWVLFPIIDARPQLVGVSISRTVFASQKQPFSHIVAKMEAQSPGVVAEVRVVHHQDLNKSILIALIVSTTLLGAILLSLLCFWICRRKSSNLDDGECQKNLEASKGMTINPIKSRFNSLRLANFKGSVSTIDYKLLEAATDHFSKSNVLGEGGTGHVYKARFNDKMLAAVKRIEYGGPDVEREFENEVNWLCKIRHQNVIKLLGHCIHGETRFLVYEMMQNGSLESQLHGPSHGSALTWHLRMKIAVDIARGLEYLHEHRSPPVVHRDLKSSNILLDSDFNAKLSDFGLTVNLGAQNKNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELMTGKKPVEKMGPSQSQSLVSWAIPQFSDRSKLPKIVDPVIRDTMDLKHLYQVAAVAVLCVQSEPSYRPLVTDVLHSLIPLLPVELGGSLRMTDPLHPKVPSSTR 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5539640 5542764 + Sed0017643.1 Sed07g0739 719603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0739 448 SUPERFAMILY Protein kinase-like (PK-like) 126 421 IPR011009 -
Sed07g0739 448 FunFam probable receptor-like protein kinase At1g80640 228 426 - -
Sed07g0739 448 ProSiteProfiles Protein kinase domain profile. 152 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0739 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g0739 448 ProSitePatterns Protein kinases ATP-binding region signature. 158 180 IPR017441 GO:0005524(InterPro)
Sed07g0739 448 SMART serkin_6 152 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0739 448 CDD STKc_IRAK 158 424 - -
Sed07g0739 448 Pfam Protein tyrosine and serine/threonine kinase 155 363 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g0739 448 Gene3D Transferase(Phosphotransferase) domain 1 228 426 - -
Sed07g0739 448 PANTHER OS01G0750732 PROTEIN 57 425 IPR050885 -
Sed07g0739 448 Gene3D Phosphorylase Kinase; domain 1 114 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0739 Sed-Chr7:5539640 Sed07g0742 Sed-Chr7:5539640 9.00E-255 dispersed
Sed07g0739 Sed-Chr7:5539640 Sed07g0740 Sed-Chr7:5539640 1.80E-226 tandem
Sed03g1635 Sed-Chr3:10412248 Sed07g0739 Sed-Chr7:5539640 5.60E-132 wgd
Sed05g1389 Sed-Chr5:26913615 Sed07g0739 Sed-Chr7:5539640 2.60E-39 wgd
Sed07g0739 Sed-Chr7:5539640 Sed09g1468 Sed-Chr9:38470732 2.50E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79432 PF07714 PK_Tyr_Ser-Thr 4.50E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0739 - - - 0.0