Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0740 ATGAATCTTCTTGGTATTTTAGTCCCCATGTGGGTTTTGTTCCCAATAATTGATGCCAGACCACAGCTTGTTGGGGTTTCAATTTCTAGGACTGTTTTTGCTTCTCAGAAACAACCCTTTTCTCACATTGTGGCAAAAATGGAAGCTCAATCCCCAGGAGTTGTTGCTGAGGTTAGAGTTGTTCACCACCAGGATTTGAACAAGAGTATTCTCATAGCATTGATTGTTTCTACCACACTTCTTGGAGCTATATTGTTGTCCCTTTTGTGCTTTTGGATATGTCGTCGAAAATCGTCGAATCTTGATGATGGAGAATGTCAAAAGAATTTGGAGGCTTCGAAAGGGATGACAATAAATCCCATCAAATCTAGATTTAACTCCTTGAGGTTGGCTAATTTCAAAGGCTCGGTTTCCACGATTGACTATAAACTGTTGGAAGCAGCTACTGATCACTTCAGCAAAAGCAATGTTTTGGGAGAAGGCGGTACCGGGCATGTTTACAAAGCCCGGTTCAATGATAAAATGCTGGCGGCTGTGAAGAGAATAGAATATGGAGGACCAGATGTTGAAAGAGAATTTGAGAATGAGGTGAACTGGCTGTGTAAAATTCGACATCAAAATGTAATCAAACTCTTGGGACATTGCATTCATGGCGAAACACGGTTTCTTGTTTATGAGATGATGCAAAATGGATCTTTGGAGTCTCAATTGCACGGACCTTCTCATGGATCGGCTTTAACTTGGCATCTTCGAATGAAGATCGCTGTTGACATTGCAAGAGGATTGGAGTATCTTCACGAGCACCGAAGTCCTCCAGTCGTTCATCGAGATTTGAAATCATCAAATATCCTTCTAGATTCAGACTTTAATGCCAAGCTCTCTGACTTTGGCCTTACTGTAAACTTGGGAGCTCAAAATAAAAACATAAAGCTCTCTGGAACTTTGGGATATGTCGCCCCGGAATACCTTTTAGATGGTAAACTAACTGATAAAAGTGACGTCTATGCTTTTGGAGTTGTTCTTTTAGAGCTTATGACCGGGAAAAAGCCTGTCGAAAAGATGGGACCTTCTCAATCCCAATCTCTAGTCTCATGGGCGATCCCGCAGTTCAGTGACAGATCAAAGCTCCCGAAAATTGTCGATCCCGTGATAAGGGACACGATGGATTTGAAGCACTTATACCAAGTTTGTTCATTGCTTTACTCTTGTTCAATTAGTTGA 1221 41.44 MNLLGILVPMWVLFPIIDARPQLVGVSISRTVFASQKQPFSHIVAKMEAQSPGVVAEVRVVHHQDLNKSILIALIVSTTLLGAILLSLLCFWICRRKSSNLDDGECQKNLEASKGMTINPIKSRFNSLRLANFKGSVSTIDYKLLEAATDHFSKSNVLGEGGTGHVYKARFNDKMLAAVKRIEYGGPDVEREFENEVNWLCKIRHQNVIKLLGHCIHGETRFLVYEMMQNGSLESQLHGPSHGSALTWHLRMKIAVDIARGLEYLHEHRSPPVVHRDLKSSNILLDSDFNAKLSDFGLTVNLGAQNKNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELMTGKKPVEKMGPSQSQSLVSWAIPQFSDRSKLPKIVDPVIRDTMDLKHLYQVCSLLYSCSIS 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5539640 5542764 + Sed0017643.2 Sed07g0740 719604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0740 406 Gene3D Phosphorylase Kinase; domain 1 114 227 - -
Sed07g0740 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g0740 406 ProSitePatterns Protein kinases ATP-binding region signature. 158 180 IPR017441 GO:0005524(InterPro)
Sed07g0740 406 PANTHER OS01G0750732 PROTEIN 57 403 IPR050885 -
Sed07g0740 406 SUPERFAMILY Protein kinase-like (PK-like) 126 391 IPR011009 -
Sed07g0740 406 SMART serkin_6 152 402 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0740 406 Gene3D Transferase(Phosphotransferase) domain 1 228 406 - -
Sed07g0740 406 FunFam probable receptor-like protein kinase At1g80640 228 405 - -
Sed07g0740 406 Pfam Protein tyrosine and serine/threonine kinase 155 362 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g0740 406 ProSiteProfiles Protein kinase domain profile. 152 406 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0740 Sed-Chr7:5539640 Sed07g0742 Sed-Chr7:5539640 1.40E-225 dispersed
Sed07g0739 Sed-Chr7:5539640 Sed07g0740 Sed-Chr7:5539640 1.80E-226 tandem
Sed07g0740 Sed-Chr7:5539640 Sed07g0741 Sed-Chr7:5539640 3.10E-185 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79433 PF07714 PK_Tyr_Ser-Thr 7.70E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0740 - - - 0.0