Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0742 ATGAATCTTCTTGGTATTTTAGTCCCCATGTGGGTTTTGTTCCCAATAATTGATGCCAGACCACAGCTTGTTGGGGTTTCAATTTCTAGGACTGTTTTTGCTTCTCAGAAACAACCCTTTTCTCACATTGTGGCAAAAATGGAAGCTCAATCCCCAGGAGTTGTTGCTGAGGTTAGAGTTGTTCACCACCAGGATTTGAACAAGAGTATTCTCATAGCATTGATTGTTTCTACCACACTTCTTGGAGCTATATTGTTGTCCCTTTTGTGCTTTTGGATATGTCGTCGAAAATCGTCGAATCTTGATGATGGAGAATGTCAAAAGAATTTGGAAGAGGCTTCGAAAGGGATGACAATAAATCCCATCAAATCTAGATTTAACTCCTTGAGGTTGGCTAATTTCAAAGGCTCGGTTTCCACGATTGACTATAAACTGTTGGAAGCAGCTACTGATCACTTCAGCAAAAGCAATGTTTTGGGAGAAGGCGGTACCGGGCATGTTTACAAAGCCCGGTTCAATGATAAAATGCTGGCGGCTGTGAAGAGAATAGAATATGGAGGACCAGATGTTGAAAGAGAATTTGAGAATGAGGTGAACTGGCTGTGTAAAATTCGACATCAAAATGTAATCAAACTCTTGGGACATTGCATTCATGGCGAAACACGGTTTCTTGTTTATGAGATGATGCAAAATGGATCTTTGGAGTCTCAATTGCACGGACCTTCTCATGGATCGGCTTTAACTTGGCATCTTCGAATGAAGATCGCTGTTGACATTGCAAGAGGATTGGAGTATCTTCACGAGCACCGAAGTCCTCCAGTCGTTCATCGAGATTTGAAATCATCAAATATCCTTCTAGATTCAGACTTTAATGCCAAGCTCTCTGACTTTGGCCTTACTGTAAACTTGGGAGCTCAAAATAAAAACATAAAGCTCTCTGGAACTTTGGGATATGTCGCCCCGGAATACCTTTTAGATGGTAAACTAACTGATAAAAGTGACGTCTATGCTTTTGGAGTTGTTCTTTTAGAGCTTATGACCGGGAAAAAGCCTGTCGAAAAGATGGGACCTTCTCAATCCCAATCTCTAGTCTCATGGGCGATCCCGCAGTTCAGTGACAGATCAAAGCTCCCGAAAATTGTCGATCCCGTGATAAGGGACACGATGGATTTGAAGCACTTATACCAAGTAGCTGCTGTAGCTGTGCTATGTGTACAATCAGAACCGAGCTACCGACCATTAGTTACCGATGTTCTGCATTCCCTCATCCCTCTTTTACCTGTAGAGCTTGGAGGATCACTACGAATGACAGACCCACTTCATCCAAAAGTGCCTTCGTCGACTCGCTAA 1350 42.52 MNLLGILVPMWVLFPIIDARPQLVGVSISRTVFASQKQPFSHIVAKMEAQSPGVVAEVRVVHHQDLNKSILIALIVSTTLLGAILLSLLCFWICRRKSSNLDDGECQKNLEEASKGMTINPIKSRFNSLRLANFKGSVSTIDYKLLEAATDHFSKSNVLGEGGTGHVYKARFNDKMLAAVKRIEYGGPDVEREFENEVNWLCKIRHQNVIKLLGHCIHGETRFLVYEMMQNGSLESQLHGPSHGSALTWHLRMKIAVDIARGLEYLHEHRSPPVVHRDLKSSNILLDSDFNAKLSDFGLTVNLGAQNKNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELMTGKKPVEKMGPSQSQSLVSWAIPQFSDRSKLPKIVDPVIRDTMDLKHLYQVAAVAVLCVQSEPSYRPLVTDVLHSLIPLLPVELGGSLRMTDPLHPKVPSSTR 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5539640 5542764 + Sed0017643.4 Sed07g0742 719606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0742 449 CDD STKc_IRAK 159 425 - -
Sed07g0742 449 Gene3D Transferase(Phosphotransferase) domain 1 229 427 - -
Sed07g0742 449 ProSitePatterns Protein kinases ATP-binding region signature. 159 181 IPR017441 GO:0005524(InterPro)
Sed07g0742 449 Pfam Protein tyrosine and serine/threonine kinase 156 364 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g0742 449 SMART serkin_6 153 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0742 449 SUPERFAMILY Protein kinase-like (PK-like) 127 422 IPR011009 -
Sed07g0742 449 PANTHER OS01G0750732 PROTEIN 57 426 IPR050885 -
Sed07g0742 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g0742 449 ProSiteProfiles Protein kinase domain profile. 153 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0742 449 FunFam probable receptor-like protein kinase At1g80640 229 427 - -
Sed07g0742 449 Gene3D Phosphorylase Kinase; domain 1 115 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1635 Sed-Chr3:10412248 Sed07g0742 Sed-Chr7:5539640 7.30E-132 dispersed
Sed07g0739 Sed-Chr7:5539640 Sed07g0742 Sed-Chr7:5539640 9.00E-255 dispersed
Sed07g0740 Sed-Chr7:5539640 Sed07g0742 Sed-Chr7:5539640 1.40E-225 dispersed
Sed07g0742 Sed-Chr7:5539640 Sed09g1468 Sed-Chr9:38470732 6.20E-179 dispersed
Sed07g0741 Sed-Chr7:5539640 Sed07g0742 Sed-Chr7:5539640 3.00E-184 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79435 PF07714 PK_Tyr_Ser-Thr 4.60E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0742 - - - 0.0