Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0743 ATGGCCCGACCTCAACAACGCTATCGCGGTGTTCGTCAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGACACCCTCTATTGAAAACAAGAATATGGTTGGGGACGTTCGAGACAGCAGAGGACGCAGCCCGAGCCTACGACGAGGCAGCACGGTTGATGTGTGGACCGAAAGCACGAACCAACTTCCAATTCAACCCGAACGAGTCATCGTCGTCTTCCTCCTCCTCTAAGCTTCTCTCTGCGGCATTGATAGCAAAATTACATAAATGTCATTTAGCCTCACTCCAAATCGTCAAAAAGCACGTCCAGAAACAACAACACCCCGAATCTGACCCCACCTACGCGGCGTACGGCAGCCCTTCGCCGACCACTGCCGGAGCCACCACCGGGCAATGGTGGCCGGAAGATACATGGGTGTACTCCAACGAATCCCAAATGGAGATCAATTATAATAACAGCAACAATGTTCATCATCAGCAATGCCTTCAGCCTCTTGAAGATGATCACATTGAACAAATGATACAAGAGCTACTAGACCTCGGACCAATCGAAATTATCACTTAA 567 49.91 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQFNPNESSSSSSSSKLLSAALIAKLHKCHLASLQIVKKHVQKQQHPESDPTYAAYGSPSPTTAGATTGQWWPEDTWVYSNESQMEINYNNSNNVHHQQCLQPLEDDHIEQMIQELLDLGPIEIIT 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5549713 5550708 - Sed0005507.1 Sed07g0743 719607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0743 188 MobiDBLite consensus disorder prediction 109 131 - -
Sed07g0743 188 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677(InterPro)
Sed07g0743 188 CDD AP2 6 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g0743 188 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g0743 188 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 164 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Sed07g0743 188 MobiDBLite consensus disorder prediction 104 131 - -
Sed07g0743 188 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g0743 188 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g0743 188 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Sed07g0743 188 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g0743 188 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g0743 188 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0743 Sed-Chr7:5549713 Sed11g1154 Sed-Chr11:27466876 5.60E-41 dispersed
Sed07g0737 Sed-Chr7:5514320 Sed07g0743 Sed-Chr7:5549713 8.20E-16 proximal
Sed05g1411 Sed-Chr5:27503087 Sed07g0743 Sed-Chr7:5549713 1.90E-38 transposed
Sed03g1636 Sed-Chr3:10430156 Sed07g0743 Sed-Chr7:5549713 1.70E-44 wgd
Sed07g0743 Sed-Chr7:5549713 Sed09g1473 Sed-Chr9:38501372 8.20E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39027 PF00847 AP2 7.80E-12 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0743 - - - 0.0