Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g0743 | ATGGCCCGACCTCAACAACGCTATCGCGGTGTTCGTCAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGACACCCTCTATTGAAAACAAGAATATGGTTGGGGACGTTCGAGACAGCAGAGGACGCAGCCCGAGCCTACGACGAGGCAGCACGGTTGATGTGTGGACCGAAAGCACGAACCAACTTCCAATTCAACCCGAACGAGTCATCGTCGTCTTCCTCCTCCTCTAAGCTTCTCTCTGCGGCATTGATAGCAAAATTACATAAATGTCATTTAGCCTCACTCCAAATCGTCAAAAAGCACGTCCAGAAACAACAACACCCCGAATCTGACCCCACCTACGCGGCGTACGGCAGCCCTTCGCCGACCACTGCCGGAGCCACCACCGGGCAATGGTGGCCGGAAGATACATGGGTGTACTCCAACGAATCCCAAATGGAGATCAATTATAATAACAGCAACAATGTTCATCATCAGCAATGCCTTCAGCCTCTTGAAGATGATCACATTGAACAAATGATACAAGAGCTACTAGACCTCGGACCAATCGAAATTATCACTTAA | 567 | 49.91 | MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQFNPNESSSSSSSSKLLSAALIAKLHKCHLASLQIVKKHVQKQQHPESDPTYAAYGSPSPTTAGATTGQWWPEDTWVYSNESQMEINYNNSNNVHHQQCLQPLEDDHIEQMIQELLDLGPIEIIT | 188 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 5549713 | 5550708 | - | Sed0005507.1 | Sed07g0743 | 719607 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g0743 | 188 | MobiDBLite | consensus disorder prediction | 109 | 131 | - | - | |
Sed07g0743 | 188 | SUPERFAMILY | DNA-binding domain | 7 | 65 | IPR016177 | GO:0003677(InterPro) | |
Sed07g0743 | 188 | CDD | AP2 | 6 | 64 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g0743 | 188 | Gene3D | AP2/ERF domain | 6 | 65 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g0743 | 188 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 7 | 164 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Sed07g0743 | 188 | MobiDBLite | consensus disorder prediction | 104 | 131 | - | - | |
Sed07g0743 | 188 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g0743 | 188 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g0743 | 188 | FunFam | Ethylene-responsive transcription factor 2 | 6 | 65 | - | - | |
Sed07g0743 | 188 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g0743 | 188 | Pfam | AP2 domain | 7 | 56 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g0743 | 188 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g0743 | Sed-Chr7:5549713 | Sed11g1154 | Sed-Chr11:27466876 | 5.60E-41 | dispersed | |
Sed07g0737 | Sed-Chr7:5514320 | Sed07g0743 | Sed-Chr7:5549713 | 8.20E-16 | proximal | |
Sed05g1411 | Sed-Chr5:27503087 | Sed07g0743 | Sed-Chr7:5549713 | 1.90E-38 | transposed | |
Sed03g1636 | Sed-Chr3:10430156 | Sed07g0743 | Sed-Chr7:5549713 | 1.70E-44 | wgd | |
Sed07g0743 | Sed-Chr7:5549713 | Sed09g1473 | Sed-Chr9:38501372 | 8.20E-16 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39027 | PF00847 | AP2 | 7.80E-12 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g0743 | - | - | - | 0.0 |