Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0780 ATGGAAGGTATCTCGCTTCACGGAACGCTTCACGCCACGATCTATGAGGTCGATAAGTTGCATCATGGTGATGGTGGTGCTGGTGGATCCAACTTCTTCAGCGCGTTAAAGCAAAACATTGAGGAGGCTGTTGGACTTGGAAAAGGAGTTACCAAACTATATGCGACTATAGATTTAGAAAAGGCTAGAGTTGGGAGGACACGACTATTGGAAAGTGATCCCCATAACCCAAGGTGGTATGAATCTTTTCACATCTACTGTGCTCACAGGGCATCAAATGTTGTCTTCACCGTGAAGGATGACAATCCCATCGGTGCAACTTTGATTGGGCGCGCATATGTACCTGTGGAAGACCTCGTCGATGGGGAGGAAGTCGATAGGTGGGTTCCAATCTTAGATGAAGAGAAAAATCCAATTGAAGGAGATTCTAAGATTCATGTCAAGCTCCAATACTTTAATGTTACCAAAGATCGTAATTGGGGTCGAGGTATACGAAGCCGCAAATTTCCTGGAGTGCCATACACATATTACCCACAGAGAGAAGGTTGTCGGGTCTCTTTGTATCAAGATGCTCATATCCCTGATAAGTTTATTCCTAAAATACCTCTTGCTGGAGGAAAGCATTATGCTCCCGCCAGATGTTGGGAAGATATTTTTGATGCCATACGAAATGCAAAACACATGATCTACATCACAGGATGGTCTGTTTATACAGAAATTGCCTTGATAAGGGACTCGAGGAGGCCGAAGCCTGGAGGAGAAACCATGCTTGGTGAGCTGCTTAAGAAGAAAGCAAGTGAAGGCGTCAGAGTTCTTATGCTTGTGTGGGATGATAGAACATCAGTCGGTTTACTGAAAAAGGATGGTCTGATGGCGACTCATGATGAAGAAACTGCAATTTACTTTCAAGATACTGATGTGCACTGTGTCTTGTGCCCTCGTAATCCTGATGATGGTGGAAGCATTGTTCAAGATCTACAAATCTCTACCATGTTCACCCATCATCAGAAGATCGTTGTGGTGGATAGCCCAATGCCGAGTGGAGATTCGGGTCAGAGGAGAATTGTGAGTTTCGTCGGTGGCCTTGACCTCTGCGATGGTAGGTACGACACGCCCTTTCATTCCCTTTTCAGGACATTGGATACTGCACATCATGATGATTTCCATCAACCAAATTTCCCTGGTGCATTGATAACAAAAGGTGGACCACGGGAACCCTGGCACGACATCCATTCCCGGCTTGAAGGCCCCATTGCCTGGGATGTCTTATTCAATTTTGAGCAAAGGTGGAAGAAACAAGGTGGGAAGGATATACTTGTGCAGCTTCGAGAGCTTGAAGAAATAATTATTCCTCCATCTCCTGTTATGTACCCCGATGACCATGAAATTTGGAGTGTTCAATTGTTTAGATCAATAGATGGTGGGGCAGCTTTTGGCTTTCCCGATACCCCCGAAGATGCTGCTAAAGCTGGTTTAGTCAGTGGGAAAGATAACATTATTGATCGAAGCATTCAAGACGCTTACATTAATGCTATTAGGCGGGCTAAGAATTTTATTTATATTGAAAACCAATATTTTCTTGGAAGTTGTTTTGGATGGTCCCCTGATGACATCAAGCCTGAGGATATTGGTGCCTTGCACTGTATCCCAAGAGAGCTTTCCCTCAAGATCTGTAGTAAGATTGCAGCAGGGGAAAGGTTCACTGTGTATGTAGTTGTTCCAATGTGGCCAGAAGGATTGCCAGAAAGTGGATCAGTTCAGGCAATATTAGATTGGCAGAGGAGGACATTTGAAATGATGTATAAAGATGTGATCCACGCTCTTCGAGAACAAGGTATCGACGAAGACCCCCGTAACTACTTGACATTCTTCTGTCTTGGCAATCGGGAAGTCAAGAGGTCCGGAGAATATGAACCTACAGAAGCACCAGATGAGGATTCTGATTATATGAAAGCCCAACAAGCCAGGCGTTTCATGATTTATGTTCACACCAAGATGATGATTGTGGATGATGAGTACATAATTGTTGGATCGGCCAATATCAACCAAAGATCCATGGATGGTGCAAGGGACTCTGAGATAGCTATGGGCTCTTATCAGCCATATCATCTGTCAACCCACGAACCTGCACGTGGTCAAGTTCACGGATTCCGTATGGCTCTATGGTATGAACACCTTGGCATGCTTGATGGAACATTCCTTCGGCCAGAAAGCGAAGAATGTGTTTCGAAGGTTAACCGAATGGCTGATAAGTATTGGGATCTGTATTCAAGTGAAGCACTTGAGAGGGACTTGCCTGGTCACCTCCTCCGCTATCCTGTCGGCATAAGCAGCGAAGGAAATGTCACTGAGCTCCCAGGATGCGAGTTCTTCCCCGACACCAAAGCTCGTGTACTCGGAACCAAATCTGACTACCTACCTCCCATTCTCACTACTTAA 2439 45.06 MEGISLHGTLHATIYEVDKLHHGDGGAGGSNFFSALKQNIEEAVGLGKGVTKLYATIDLEKARVGRTRLLESDPHNPRWYESFHIYCAHRASNVVFTVKDDNPIGATLIGRAYVPVEDLVDGEEVDRWVPILDEEKNPIEGDSKIHVKLQYFNVTKDRNWGRGIRSRKFPGVPYTYYPQREGCRVSLYQDAHIPDKFIPKIPLAGGKHYAPARCWEDIFDAIRNAKHMIYITGWSVYTEIALIRDSRRPKPGGETMLGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETAIYFQDTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSPMPSGDSGQRRIVSFVGGLDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGALITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWKKQGGKDILVQLRELEEIIIPPSPVMYPDDHEIWSVQLFRSIDGGAAFGFPDTPEDAAKAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCFGWSPDDIKPEDIGALHCIPRELSLKICSKIAAGERFTVYVVVPMWPEGLPESGSVQAILDWQRRTFEMMYKDVIHALREQGIDEDPRNYLTFFCLGNREVKRSGEYEPTEAPDEDSDYMKAQQARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGSYQPYHLSTHEPARGQVHGFRMALWYEHLGMLDGTFLRPESEECVSKVNRMADKYWDLYSSEALERDLPGHLLRYPVGISSEGNVTELPGCEFFPDTKARVLGTKSDYLPPILTT 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5807850 5811537 - Sed0016480.1 Sed07g0780 719644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0780 812 SMART C2_3c 35 128 IPR000008 -
Sed07g0780 812 CDD C2_plant_PLD 6 152 - -
Sed07g0780 812 PANTHER PHOSPHOLIPASE D 41 799 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Sed07g0780 812 PIRSF PLD_plant 1 812 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Sed07g0780 812 Gene3D Endonuclease Chain A 483 701 - -
Sed07g0780 812 Gene3D C2 domain 6 160 IPR035892 -
Sed07g0780 812 SMART pld_4 658 685 IPR001736 GO:0003824(InterPro)
Sed07g0780 812 SMART pld_4 330 368 IPR001736 GO:0003824(InterPro)
Sed07g0780 812 SUPERFAMILY Phospholipase D/nuclease 155 449 - -
Sed07g0780 812 CDD PLDc_pPLDalpha_2 496 705 - -
Sed07g0780 812 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 330 368 IPR001736 GO:0003824(InterPro)
Sed07g0780 812 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 154 IPR035892 -
Sed07g0780 812 SUPERFAMILY Phospholipase D/nuclease 452 741 - -
Sed07g0780 812 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 658 685 IPR001736 GO:0003824(InterPro)
Sed07g0780 812 Gene3D Endonuclease Chain A 204 447 - -
Sed07g0780 812 Pfam Phospholipase D C terminal 732 802 IPR024632 -
Sed07g0780 812 FunFam Phospholipase D delta 205 448 - -
Sed07g0780 812 ProSiteProfiles C2 domain profile. 1 129 IPR000008 -
Sed07g0780 812 FunFam Phospholipase D 471 704 - -
Sed07g0780 812 Pfam C2 domain 39 130 IPR000008 -
Sed07g0780 812 Pfam Phospholipase D Active site motif 331 368 IPR001736 GO:0003824(InterPro)
Sed07g0780 812 Pfam Phospholipase D Active site motif 660 685 IPR001736 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2216 Sed-Chr6:45828442 Sed07g0780 Sed-Chr7:5807850 1.70E-165 dispersed
Sed07g0780 Sed-Chr7:5807850 Sed09g0096 Sed-Chr9:718036 4.00E-200 dispersed
Sed03g1669 Sed-Chr3:10783572 Sed07g0780 Sed-Chr7:5807850 6.00E-191 wgd
Sed05g1449 Sed-Chr5:28237338 Sed07g0780 Sed-Chr7:5807850 0.00E+00 wgd
Sed07g0780 Sed-Chr7:5807850 Sed09g1494 Sed-Chr9:38679941 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0780 K01115 - csv:101206113 1543.87