Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0787 ATGACATATTTTCCTAGTTTAAGCAATCAAAGAGACTCCATGTTAGGTGATCAGAAGCTTGGTTCTTCTTGTCAAGAACAGCCTCTCTGTTCTGGGAATTTGATGATGTTTATGAATCATCAAGATCCTTCTTGTAGAGATTATTCTGAGATTTTTTCTGGGGTTTCTTCGAATTATGTTGAATCTGTTGGAGATAGAAGGAATGATGAATTGGCTTTCATTCCACCAGTTGTGGGAATTTTAGATGACTCAAATTTTCAATGTCAGGGTGTTTCACTTAGCCTTTCCACACACTCTCCTTCTGTTGTTTCATTGCCTTCATTTCCTCCACAATATCAGACCACTGCCTTGGCTTCTTCATTCATCAATGCTCCTCCTTCGATCTTCGATAGGAGGCTGAATCTGAAACCATGTATGTCTGATGTGAAAAATGGCATGTATATGGCGTTGTCGAATTCGATATACATCAAAGCTGCACAGCAGTTGCTCGACCAAATGGTTAGTTTCCGGGAAGCTTTGAAGGAGCTGAAGTCTAAGAAACTTAAAGGTTCCAATGGTTTAGGGGTTGATTCCTGCAGAGAAAATGATGGGGGATCTAATGATCTGACTGGGGAGATGTGCTCCGATGCGAGGGAGTCATCGATTGCCAATTCGTCCGGTGATCTATCGCCTACCGAACGACAGGACTTGAAGAATAAAAACTCAAGGCTTTTGACCTTGTTGGGTGAGGTGGATCGAAGATACAAGCAATATTACCAACAGTTGCAATTCTTGGCATCGTCTTTCGACATGGTAGCAGGTCGGGGAGCTGCAGAGTTCTACACTGCACTTGCACACCGGACTATTTCATGCCACTTTCGCCGTTTGCGCGATGCAATCAATGCACAGATTGAAGTGACTAGGAGAAACTTAGGAGAGCAAGATGCTTCACATCCTGGCCATGAGGGCATTCCTCGTCTTCGCTTTATCGACCAGCAGCTCAGGCAACAGAGGGCCCTTCAGCAGCTCGGTGTCATGCCACATAGTTGGAGGCCTCAACGAGGGCTTCCCGAAAGCTCTGTGTCGATTCTTCGTGCTTGGCTGTTTGAACACTTCCTCCATCCATATCCCAAGGATTCAGAGAAACTTAAGCTAGCAAGACAAACTGGCCTGACTAGAAACCAAGTTGCAAACTGGTTTATAAATGCACGTGTTCGGCTATGGAAACCAATGGTCGAGGAGATGTACAAAGAAGAATTCGGAGACTCCAACATGGACATCAAATCCTCACCCGAAAATGCAGCCAAAGCATCTTGGAACAATTCACTATTCTACGAAGACAGAGGACTAGACGAGTTGCATGACGGCCTGAAGTCTGCAGCAAATAACAGCGACCGAGTACTCTACCGCCCGTGCTATACCAACGACACGATCAAGTCGAGTAACTTCTCCGTCGGGGGAGACGTTTCACTTGCACTTGAATTGAAGCATTGTGAAGGTGATGAATTCGGCATGTTTGGAAGTAACAATAGAATGGTTGGTTCTGTGGAGCTTGAGGCACAAGATTTTCCATCTTTGGAAGAAAGACATCATCAATGCAGGCTCACAAATTCAAATATGTTGCATGATTTTGTAGTTTGA 1620 44.63 MTYFPSLSNQRDSMLGDQKLGSSCQEQPLCSGNLMMFMNHQDPSCRDYSEIFSGVSSNYVESVGDRRNDELAFIPPVVGILDDSNFQCQGVSLSLSTHSPSVVSLPSFPPQYQTTALASSFINAPPSIFDRRLNLKPCMSDVKNGMYMALSNSIYIKAAQQLLDQMVSFREALKELKSKKLKGSNGLGVDSCRENDGGSNDLTGEMCSDARESSIANSSGDLSPTERQDLKNKNSRLLTLLGEVDRRYKQYYQQLQFLASSFDMVAGRGAAEFYTALAHRTISCHFRRLRDAINAQIEVTRRNLGEQDASHPGHEGIPRLRFIDQQLRQQRALQQLGVMPHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSNMDIKSSPENAAKASWNNSLFYEDRGLDELHDGLKSAANNSDRVLYRPCYTNDTIKSSNFSVGGDVSLALELKHCEGDEFGMFGSNNRMVGSVELEAQDFPSLEERHHQCRLTNSNMLHDFVV 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5833243 5836036 - Sed0009389.1 Sed07g0787 719651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0787 539 CDD homeodomain 343 404 IPR001356 GO:0003677(InterPro)
Sed07g0787 539 Gene3D - 340 417 - -
Sed07g0787 539 ProSiteProfiles 'Homeobox' domain profile. 340 403 IPR001356 GO:0003677(InterPro)
Sed07g0787 539 SMART prehox3 144 295 IPR006563 -
Sed07g0787 539 SMART HOX_1 343 407 IPR001356 GO:0003677(InterPro)
Sed07g0787 539 MobiDBLite consensus disorder prediction 1 20 - -
Sed07g0787 539 Coils Coil 159 179 - -
Sed07g0787 539 Pfam Associated with HOX 150 293 IPR006563 -
Sed07g0787 539 SUPERFAMILY Homeodomain-like 344 411 IPR009057 -
Sed07g0787 539 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 98 427 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed07g0787 539 Pfam Homeobox KN domain 360 399 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed07g0787 539 MobiDBLite consensus disorder prediction 182 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0277 Sed-Chr1:2137265 Sed07g0787 Sed-Chr7:5833243 2.40E-86 dispersed
Sed05g3534 Sed-Chr5:43959941 Sed07g0787 Sed-Chr7:5833243 5.30E-89 dispersed
Sed07g0787 Sed-Chr7:5833243 Sed12g1342 Sed-Chr12:10289584 2.60E-67 dispersed
Sed07g0787 Sed-Chr7:5833243 Sed07g0788 Sed-Chr7:5833243 2.90E-223 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39030 PF07526 POX 1.80E-38 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0787 - - - 0.0