Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0788 ATGACATATTTTCCTAGTTTAAGCAATCAAAGAGACTCCATGTTAGGTGATCAGAAGCTTGGTTCTTCTTGTCAAGAACAGCCTCTCTGTTCTGGGAATTTGATGATGTTTATGAATCATCAAGATCCTTCTTGTAGAGATTATTCTGAGATTTTTTCTGGGGTTTCTTCGAATTATGTTGAATCTGTTGGAGATAGAAGGAATGATGAATTGGCTTTCATTCCACCAGTTGTGGGAATTTTAGATGACTCAAATTTTCAATGTCAGGGTGTTTCACTTAGCCTTTCCACACACTCTCCTTCTGTTGTTTCATTGCCTTCATTTCCTCCACAATATCAGACCACTGCCTTGGCTTCTTCATTCATCAATGCTCCTCCTTCGATCTTCGATAGGAGGCTGAATCTGAAACCATGTATGTCTGATGTGAAAAATGGCATGTATATGGCGTTGTCGAATTCGATATACATCAAAGCTGCACAGCAGTTGCTCGACCAAATGGTTAGTTTCCGGGAAGCTTTGAAGGAGCTGAAGTCTAAGAAACTTAAAGGTTCCAATGGTTTAGGGGTTGATTCCTGCAGAGAAAATGATGGGGGATCTAATGATCTGACTGGGGAGATGTGCTCCGATGCGAGGGAGTCATCGATTGCCAATTCGTCCGGTGATCTATCGCCTACCGAACGACAGGACTTGAAGAATAAAAACTCAAGGCTTTTGACCTTGTTGGGTGAGGTGGATCGAAGATACAAGCAATATTACCAACAGTTGCAATTCTTGGCATCGTCTTTCGACATGGTAGCAGGTCGGGGAGCTGCAGAGTTCTACACTGCACTTGCACACCGGACTATTTCATGCCACTTTCGCCGTTTGCGCGATGCAATCAATGCACAGATTGAAGTGACTAGGAGAAACTTAGGAGAGCAAGATGCTTCACATCCTGGCCATGAGGGCATTCCTCGTCTTCGCTTTATCGACCAGCAGCTCAGGCAACAGAGGGCCCTTCAGCAGCTCGGTGTCATGCCACATAGTTGGAGGCCTCAACGAGGGCTTCCCGAAAGCTCTGTGTCGATTCTTCGTGCTTGGCTGTTTGAACACTTCCTCCATCCATATCCCAAGGATTCAGAGAAACTTAAGCTAGCAAGACAAACTGGCCTGACTAGAAACCAAGTAATGTCTTTAATCCTCAACCCAAAACTCGATTTTTTGCCCTGCTTGTGGATTTGA 1221 44.55 MTYFPSLSNQRDSMLGDQKLGSSCQEQPLCSGNLMMFMNHQDPSCRDYSEIFSGVSSNYVESVGDRRNDELAFIPPVVGILDDSNFQCQGVSLSLSTHSPSVVSLPSFPPQYQTTALASSFINAPPSIFDRRLNLKPCMSDVKNGMYMALSNSIYIKAAQQLLDQMVSFREALKELKSKKLKGSNGLGVDSCRENDGGSNDLTGEMCSDARESSIANSSGDLSPTERQDLKNKNSRLLTLLGEVDRRYKQYYQQLQFLASSFDMVAGRGAAEFYTALAHRTISCHFRRLRDAINAQIEVTRRNLGEQDASHPGHEGIPRLRFIDQQLRQQRALQQLGVMPHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLARQTGLTRNQVMSLILNPKLDFLPCLWI 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5833243 5836036 - Sed0009389.2 Sed07g0788 719652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0788 406 Pfam Homeobox KN domain 360 390 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed07g0788 406 Gene3D - 349 396 - -
Sed07g0788 406 SMART prehox3 144 295 IPR006563 -
Sed07g0788 406 MobiDBLite consensus disorder prediction 1 20 - -
Sed07g0788 406 Coils Coil 159 179 - -
Sed07g0788 406 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 98 389 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed07g0788 406 SUPERFAMILY Homeodomain-like 338 390 IPR009057 -
Sed07g0788 406 Pfam Associated with HOX 150 293 IPR006563 -
Sed07g0788 406 CDD homeodomain 343 389 IPR001356 GO:0003677(InterPro)
Sed07g0788 406 MobiDBLite consensus disorder prediction 182 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0788 Sed-Chr7:5833243 Sed12g1342 Sed-Chr12:10289584 4.30E-54 dispersed
Sed07g0787 Sed-Chr7:5833243 Sed07g0788 Sed-Chr7:5833243 2.90E-223 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0788 - - - 0.0