Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0805 ATGGCGACGACAGGTAACCAAATTCCCCATCTTTCCTTCATCCTGCTTTTACTTTCACCATTTTCAAACGCCCAATCCGATGATTTATTAGCTCAACACCAAGAACTAGCACCTGGGTCCTCGCTAGTTTCAGCCGCTGGGGTTTTTTCCCTAGGGTTTTACAGCCCTAGTTTATTGAACAACAGTCACATTGCTATTTGGTACAAGGATGATCCTCAGAACCCTGTTTGGATTGCCAATCCAAACTCTGCATTTCCTAGGAATTTTGGGACCCCCTGTCTCACAATTGATGGTAGTGGCAGTTTGAAGATTGTTCCTCAAGAGAGAAATGGACATTCCTATATTTTTCATCTCTTTGAAGCTGAAGAACTCAACAACTGTAGTGCTGTTCTTTTAGACAATGGTAACTTTGTGTTGCGAGCTGTGAACCCAGATGGGTCTGTTAAGAAACGGCTGTGGCAGAGCTTTGATCATCCTACAGATACTTTTCTGCCTGGGATGAAACTTGGGATTGACCATAAAACTGGTTCTACTTGGTCTGTTACATCTCAAAGAGGGGATTATTCTGTTCTTTCTGGGTCTTTTGTTCTCACAATGAATCCGAATAATACGAACCAGTTGTTGATATTGGTTAGAGGGGCTGTTTTGTGGACTAGTGGGAACTGGCTGGATGGCCGGTTTGAGTTTGCGGAAGAACTTAGTCAAGGGTTTGTGTTCAATCGGTTTTCGAATGAGAACGAGACGTTTTTCAACTACTCGGCCTCCAATTTGAACAATGGATTGGTTGAAGTTCAGCCGCGGTTGAGGTTGAGAAACAATGGGGAATTGGTGGGGAATAATTGGGATTTGAAAGTTGAGTGTCCCTATTTTGAGAATGAGTTGTTTGAGGCTCCTAAGGGTGTTTCTGAAGTTGGGTGTGTGGGGAAAATGCAGCACCAAGTACCCGAGTGTCGAAATCCGCCGAAAAGATTTTCGACGATTCAGAGATTTGGTAACATGGATAGAAATGGTTTGGAGTATGGAGAAAGTGAGAATCTGACAATTTATGATTGTGAAAAGAGATGTATTTCCAGGTGTGGTTGCATTGCATTTAGTTCTACGAATGAAGAAGGAACTGGTTGTGAGATGTGGAACTTGGGAGCGACGTTTGTTCATGTAGAGGGGAGCAAGCGGATTATTTGGTCCATTCAGGAGACTGAAGGGAATGCTGTTAGAAAAATAAGGAGGAAGGACACAGAGCATCAAAATTTTCTGCAAGAAATGGGATCCAAATCTAAAACGTTTAACATTTTAAAACCGAAGAACGAGCAGAGAAGAGACATAACGGACTCCGAGTTGCAGTTTTTCACATTTAAAAGTTTAGTTTCTGCAACAAACAGTTTTGCTAACAATTGTAAGATCGGAGAAGGAGGTTTTGGACCAGTTTATAAGGGAAGTTTGGCCAATGGCCAAGATGTTGCCATTAAAAGACTGTCAAAGAATTCTGGACAAGGACTAGAGGAGTTCAAGAACGAAGCCATGTTGATTGCCAAACTGCAGCACACTAATCTGGTTAGGCTTATTGGTTGCTGCATTTATAAAGAAGAGAGGTTATTGGTGTATGAGTACCTGCCTAACAAAAGCCTGGACTCCTTCCTCTTTGATCCAGTAAAGAAGCTAATACTAGATTGGGACAAACGCCTGCATGTAATCCAAGGGATAATTCAAGGACTACTCTACCTTCACAACTACTCGAGACTACGAATAGCTCATCGAGATTTAAAAGTTAGTAACATCTTGCTTGATGATGAAATGAATGCAAAAATATCAGATTTTGGTATGGCTAGAATCTTTAAGCCCACAGAACAAGAAGCAAATACTAATCACATTGTTGGTACACATGGTTATATTTCACCTGAATTTGCAATGGAAGGCACTTTCTCAATAAAATCGGACGTTTACAGCTTTGGAGTGTTGTTATTAGAGATTATAACAGCTCAAAAAAACTACAGCAATTATGATGTGGGACGACCTATCAATCTCATAGGATATGCATGGGAATTGTGGGTGAATGGCAGAGGAGAAGAACTGATTGATTCAACTTTGTACAACTTTGATCAGAAACCAAAAGCTCTAAGATGCATTCATGTTAGTCTTCTATGTGTCCAACAAATGCCAGCAGATAGACCTACCATGCTTGATGTTTATTCCATGATTCATAATGATTCCACACAACTTCCATTGCCAAAAGAACCTCCATTTTTCATCACCCATAACTCCAAATTGGAAGTAGTGATAGATGGCACTGAGCTCAAATCGGATTCAGCTACAGAAATATGTTCTTCGAATGATATGTCGGTTTCGGTCATGGTTGCTAGATGA 2361 40.91 MATTGNQIPHLSFILLLLSPFSNAQSDDLLAQHQELAPGSSLVSAAGVFSLGFYSPSLLNNSHIAIWYKDDPQNPVWIANPNSAFPRNFGTPCLTIDGSGSLKIVPQERNGHSYIFHLFEAEELNNCSAVLLDNGNFVLRAVNPDGSVKKRLWQSFDHPTDTFLPGMKLGIDHKTGSTWSVTSQRGDYSVLSGSFVLTMNPNNTNQLLILVRGAVLWTSGNWLDGRFEFAEELSQGFVFNRFSNENETFFNYSASNLNNGLVEVQPRLRLRNNGELVGNNWDLKVECPYFENELFEAPKGVSEVGCVGKMQHQVPECRNPPKRFSTIQRFGNMDRNGLEYGESENLTIYDCEKRCISRCGCIAFSSTNEEGTGCEMWNLGATFVHVEGSKRIIWSIQETEGNAVRKIRRKDTEHQNFLQEMGSKSKTFNILKPKNEQRRDITDSELQFFTFKSLVSATNSFANNCKIGEGGFGPVYKGSLANGQDVAIKRLSKNSGQGLEEFKNEAMLIAKLQHTNLVRLIGCCIYKEERLLVYEYLPNKSLDSFLFDPVKKLILDWDKRLHVIQGIIQGLLYLHNYSRLRIAHRDLKVSNILLDDEMNAKISDFGMARIFKPTEQEANTNHIVGTHGYISPEFAMEGTFSIKSDVYSFGVLLLEIITAQKNYSNYDVGRPINLIGYAWELWVNGRGEELIDSTLYNFDQKPKALRCIHVSLLCVQQMPADRPTMLDVYSMIHNDSTQLPLPKEPPFFITHNSKLEVVIDGTELKSDSATEICSSNDMSVSVMVAR 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5926200 5932074 + Sed0012566.1 Sed07g0805 719669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0805 786 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 425 536 - -
Sed07g0805 786 Gene3D Transferase(Phosphotransferase) domain 1 537 740 - -
Sed07g0805 786 Pfam D-mannose binding lectin 76 185 IPR001480 -
Sed07g0805 786 ProSitePatterns Serine/Threonine protein kinases active-site signature. 582 594 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g0805 786 SMART serkin_6 461 732 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0805 786 ProSiteProfiles Bulb-type lectin domain profile. 27 152 IPR001480 -
Sed07g0805 786 SUPERFAMILY Protein kinase-like (PK-like) 445 755 IPR011009 -
Sed07g0805 786 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 537 740 - -
Sed07g0805 786 Pfam Protein tyrosine and serine/threonine kinase 464 668 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g0805 786 ProSiteProfiles Protein kinase domain profile. 461 748 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0805 786 PIRSF SRK 403 786 IPR024171 GO:0004674(InterPro)
Sed07g0805 786 PIRSF SRK 3 289 IPR024171 GO:0004674(InterPro)
Sed07g0805 786 PIRSF SRK 282 432 IPR024171 GO:0004674(InterPro)
Sed07g0805 786 Gene3D Phosphorylase Kinase; domain 1 434 536 - -
Sed07g0805 786 Gene3D - 22 157 IPR036426 -
Sed07g0805 786 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 146 748 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed07g0805 786 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 183 IPR036426 -
Sed07g0805 786 CDD B_lectin 36 159 IPR001480 -
Sed07g0805 786 Pfam PAN-like domain 344 378 IPR003609 -
Sed07g0805 786 SMART blect_4 33 159 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0805 Sed-Chr7:5926200 Sed09g1563 Sed-Chr9:39188215 2.20E-208 dispersed
Sed07g0805 Sed-Chr7:5926200 Sed04g3135 Sed-Chr4:42146214 1.40E-130 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79436 PF07714 PK_Tyr_Ser-Thr 1.30E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0805 - - - 0.0