Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0822 ATGATATGCAGCTACAATATAAGGAATGTGATTGCTCAGGCTGGACATGTAGGGATAATTAACACAAGGGTTCAAATCAACACTATCTGGAGGAGTTTGCCTTCCAATCTTGGATTTGTTGGCACCTCGAATCGTGGATATAGAACGAGTCTCATGATGATGGTTGATACGGGTGCATCGGGAAATCGCAGGCCGGTTGTTGATAAACATCCTGAGAAGGATGAAGATGGTGGCTATGTCACTGGAGGATGGAAAAGTGATGACGGGAAACTTAGTTGGGGGTATTCAAGTTTCAGAGGGAAGAGGGCAACCATGGAAGATTTCTTTGATATTAAAATGGCGAAGGTTGATGGTCAAACGGTCTCCCTTTTTGGCATCTTTGATGGTCATGGTGGATCCCGTGCTGCAGAGTTTTTGAAGGACCATCTATTTGAGAATCTGATTAAGCATCCAAAACTTTTTATGGATACCAAATTAGCTATCAGTGAAACATTTCAACAAACTGATGCTAAATTTTTAAGTTTGGAAAAAGATACTTTAAGGGACGATGGATCTACTGCTTCAACAGCTCTACTAGTTGGCAATCATCTCTATGTTGCCAATGTTGGAGATTCGCGCACTGTAATATCAAAGGGGGGTGAAGCAATCCCTCTTTCTGAGGACCATAAACCAAATAGAACTGATGAGCGGCGGAGAATTGAAAAGGCCGGTGGTGTTGTCATGTGGGCTGGCACTTGGAGGGTAGGAGGAGTGTTAGCGATGTCCCGTGCTTTCGGTAACAAGATGTTGAAGCAGTTCGTTGTGGCTGATCCCGATATTCAGGATCTTGAAGTAGACAAGGACTTCGAGCTGCTCGTTCTCGCAAGCGACGGACTTTGGGATGTGGTACGCAATGAGGATGCAGTATCAGTTGCGGGAAAGGAAGAAGAACCCGAGGCAGCTGCTCGGAAACTAACTGAAGCAGCATTTACCCGTGGTAGCGCTGACAATATAACATGCATTGTGGTGAAGTTTCATCACGACAATGCCGGTACTGCTGCCGAAACCAGAGAAAACAAGTAA 1062 44.92 MICSYNIRNVIAQAGHVGIINTRVQINTIWRSLPSNLGFVGTSNRGYRTSLMMMVDTGASGNRRPVVDKHPEKDEDGGYVTGGWKSDDGKLSWGYSSFRGKRATMEDFFDIKMAKVDGQTVSLFGIFDGHGGSRAAEFLKDHLFENLIKHPKLFMDTKLAISETFQQTDAKFLSLEKDTLRDDGSTASTALLVGNHLYVANVGDSRTVISKGGEAIPLSEDHKPNRTDERRRIEKAGGVVMWAGTWRVGGVLAMSRAFGNKMLKQFVVADPDIQDLEVDKDFELLVLASDGLWDVVRNEDAVSVAGKEEEPEAAARKLTEAAFTRGSADNITCIVVKFHHDNAGTAAETRENK 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6050722 6055051 - Sed0007715.2 Sed07g0822 719686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0822 353 Gene3D - 84 344 IPR036457 -
Sed07g0822 353 SUPERFAMILY PP2C-like 90 339 IPR036457 -
Sed07g0822 353 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169(InterPro)
Sed07g0822 353 SMART PP2C_4 82 336 IPR001932 -
Sed07g0822 353 ProSiteProfiles PPM-type phosphatase domain profile. 92 338 IPR001932 -
Sed07g0822 353 SMART PP2C_SIG_2 90 338 IPR001932 -
Sed07g0822 353 CDD PP2Cc 94 338 IPR001932 -
Sed07g0822 353 FunFam Probable protein phosphatase 2C 76 84 344 - -
Sed07g0822 353 MobiDBLite consensus disorder prediction 63 81 - -
Sed07g0822 353 Pfam Protein phosphatase 2C 96 331 IPR001932 -
Sed07g0822 353 MobiDBLite consensus disorder prediction 62 81 - -
Sed07g0822 353 PANTHER PROTEIN PHOSPHATASE 76 337 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0822 Sed-Chr7:6050722 Sed13g0081 Sed-Chr13:517530 1.20E-177 dispersed
Sed08g0380 Sed-Chr8:2294221 Sed07g0822 Sed-Chr7:6050722 1.90E-19 dispersed
Sed07g0821 Sed-Chr7:6050722 Sed07g0822 Sed-Chr7:6050722 1.10E-202 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0822 K17506 - csv:101203681 639.802