Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0831 ATGTTTCTTAGGACATTGAAGTTTGTTCTTATAATTCAATATTTGCCAAGGGTCTTCCGAGTATACTCATTCTTAAAGAAAGTAAGATGGAGTAGTGGCATTTTGCCCAATTCTGCTGGGGCCAAAGCTATATTCAATCTCTTCTTGTATATGCTTGCAAGTCATGTCTTTGGAGCCTTATGGTACTTGTTCTCTATTGGGCGCAAAGCAACTTGCTTGCAAGTAAAGTGCCATAGTCATCCATACTGCCCTCGGAGCTATAACAACTCCACTGTTGAGAGATTTTGCATCGATAATTGCTCGGGAATAGCATCATCAAATAACACATCCGCTTTCAATTTTGGAATATTTGGTGATGCCTTTGATTATGAAGTTGTCAGTTCAACTAATTTCATATGGAAATTCTCTTTTTGTTACTGGTGGGGTCTGCAAAATCTAAGTTCTTTGGGTCAAGGCCTCAAAACTAGTAAGAATATATGGGAGATTTATTTTGCAGTCTCCTTAACCATTTCTGGCTTGGTATTGTTAGCACTCCTGATAGGAAATTTGCAGACGTTTCTGCAATCAACCATTGCAAGACTGGAGGAAATGAGATTGAAGGGGCAAGATATTGAATTATGGATGGCGTACCATTCGCTCCCTCGTGATCTAAGGAAGCGGATCAAACGATACGAGAAGTATAAATGGCAGAAAACCAGAGGTGTTGATGTTGCAAACATTCTCCATAATCTTCCGAGAGACCTTAGAAGGGACACAACAAGACACCTTTGCTTACGTGCAATCAAAAGTGTTTCAATGTTTCAAAACACGGATGAGAATTTCTTGGATGCGGTTTGTGGTTATTTGAAGCCGATGCTATACATTGAGCGTAACTTCATCGTTCGCGAAGGTGAGCCGTTAGACGAGATGATCTTCATAATCCATGGCAAGTTATGGATCTATTCCAGCTCAAGCAGGGATGGTGAAGTACCGGTTTCGTCTGAGAGTCTTAAAAAAGGGGACTTCTTTGGAGAAGATCTGTTAAAATGGGTATTGAAAGATCCACTTTTGTCCACCGTCCCCATATCCACAAAAACTGTCTCTACACACACCAAAGTGGAAGCATTTGTTTTAAGTGCAAATGATTTGAAGAATGTTGTCTCCAAATTCTGGTGGCTTATCAGTCGAGAGCTTCGAAATGACCCGGACTTTAAAGAGCGATGGGCACCATTGGCTGCTCTCGTCTTGCAAGCAGCATGGCGTCGTTACTTCAAGTGTAAGCGTGAAAGAGAGAAATCTCAGTTGAGTTTAGCCACTGAAAGTAGGAATTCACAACCTTCAGTCACCACAACCATTTATGCCTCTAAATTCATAGGTGCATTAAAAGCTTTAAATCAAACCAGAAAAAGAATAAATGGAAGCAATGATATGCCAGGATCTAGCAGCAACAATGACTTGCCAGCACATGGCAATGTCTGA 1458 40.88 MFLRTLKFVLIIQYLPRVFRVYSFLKKVRWSSGILPNSAGAKAIFNLFLYMLASHVFGALWYLFSIGRKATCLQVKCHSHPYCPRSYNNSTVERFCIDNCSGIASSNNTSAFNFGIFGDAFDYEVVSSTNFIWKFSFCYWWGLQNLSSLGQGLKTSKNIWEIYFAVSLTISGLVLLALLIGNLQTFLQSTIARLEEMRLKGQDIELWMAYHSLPRDLRKRIKRYEKYKWQKTRGVDVANILHNLPRDLRRDTTRHLCLRAIKSVSMFQNTDENFLDAVCGYLKPMLYIERNFIVREGEPLDEMIFIIHGKLWIYSSSSRDGEVPVSSESLKKGDFFGEDLLKWVLKDPLLSTVPISTKTVSTHTKVEAFVLSANDLKNVVSKFWWLISRELRNDPDFKERWAPLAALVLQAAWRRYFKCKREREKSQLSLATESRNSQPSVTTTIYASKFIGALKALNQTRKRINGSNDMPGSSSNNDLPAHGNV 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6109894 6114378 + Sed0027232.3 Sed07g0831 719695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0831 485 CDD CAP_ED 266 402 IPR000595 -
Sed07g0831 485 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 5 456 - -
Sed07g0831 485 Pfam Cyclic nucleotide-binding domain 291 381 IPR000595 -
Sed07g0831 485 Pfam Ion transport protein 15 189 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed07g0831 485 Gene3D - 1 190 - -
Sed07g0831 485 SUPERFAMILY cAMP-binding domain-like 196 383 IPR018490 -
Sed07g0831 485 Gene3D Helix hairpin bin 192 257 - -
Sed07g0831 485 SMART cnmp_10 266 395 IPR000595 -
Sed07g0831 485 SUPERFAMILY Voltage-gated potassium channels 14 231 - -
Sed07g0831 485 ProSiteProfiles cAMP/cGMP binding motif profile. 266 353 IPR000595 -
Sed07g0831 485 Gene3D Jelly Rolls 264 384 IPR014710 -
Sed07g0831 485 MobiDBLite consensus disorder prediction 463 485 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0831 Sed-Chr7:6109894 Sed07g0834 Sed-Chr7:6110206 2.60E-276 dispersed
Sed07g0830 Sed-Chr7:6109894 Sed07g0831 Sed-Chr7:6109894 4.80E-276 tandem
Sed07g0831 Sed-Chr7:6109894 Sed07g0832 Sed-Chr7:6109894 6.30E-145 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0831 K05391 - csv:101214670 738.028