Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0840 ATGTGCGATCTCGAAACTATGGCTAAGACCAAGAATGTTCGCCAGAGACGGATGAGAGTTCCTAAACTGAGGTACAAAGTACACGCTGCGGCGGAAGGTGATCGGGACAGCGAGTTAACCGAAAATGTCGCTTCGGATTCGAGTGGTGATCGAGTTCTAACCTCTGAGAAGGAAGCGATTTCTGTGTTTGATTTTGATTGTGGATTGTACAGCGAGATTTCGATTATAGGGCGGAGGAAGGAGATGGAAGACGAAGTGAGAGTGGAATTGGGATTGACGGCGATGAACGATGAGAAGTACGATTTCTTCGCCGTGTACGACGGCCACGGCGGCGCGCAGGTGGCGCAACTGTGCCGTGAGCGGTTGCACCGGATTGTGGCGGAGGAGATTGTGGATCGAGGGGAGATTGATGCGGCGGAGTGGGGAAGGTTGATGGAGAGGTGCTTTGAGAGAATGGACGATGAAGTGATTAGCGGCGTCGCCGTGATGAAGACGGTCGGCTCGGCGGTGGTTGCGGTGGTTGCCGGAAAAGATGAGGTGGTGGTGGCCAATTGCGGCGATTGTCGAGCCGTTTTGGCTAGGGCTGGAATTTCCTTGCCCTTGTCTGACGATCATAAGCCTGGCAGAGCTGATGAGTTGAAGAGAATCGAATCTGCCGGTGGGCGGGTCATAAACTGGAATGGATACCGGGTGCTAGGAGTTCTTGCCACTTCGAGATCGATCGGCGATGAATATCTTAAACCATTTGTTATCTCCAAACCAGAAGTTACTGTGACCAAGCGAACCGACCAAGACGAGTTCCTCATACTAGGAAGTGATGGTTTGTGGGATGTCGTTTCAAACGAAATTGCCTGCAATGTAGTGAGGAGATGTTTCAGAGGAAAAATGAAGAGGATCTCCCTAAAGGTGGCGAATGACAGCCATGTTGCCGAAGCTGCAGCAGTGTTGGCTGAGCTCGCCGTGGCTCGTGGAAGCAAGGACAACATCAGTGTAATAGTAGTAGATTTGAGGAAATTACCAAACAATTCCTCTCCATGA 1038 51.16 MCDLETMAKTKNVRQRRMRVPKLRYKVHAAAEGDRDSELTENVASDSSGDRVLTSEKEAISVFDFDCGLYSEISIIGRRKEMEDEVRVELGLTAMNDEKYDFFAVYDGHGGAQVAQLCRERLHRIVAEEIVDRGEIDAAEWGRLMERCFERMDDEVISGVAVMKTVGSAVVAVVAGKDEVVVANCGDCRAVLARAGISLPLSDDHKPGRADELKRIESAGGRVINWNGYRVLGVLATSRSIGDEYLKPFVISKPEVTVTKRTDQDEFLILGSDGLWDVVSNEIACNVVRRCFRGKMKRISLKVANDSHVAEAAAVLAELAVARGSKDNISVIVVDLRKLPNNSSP 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6130534 6132952 - Sed0015278.1 Sed07g0840 719704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0840 345 FunFam Protein phosphatase 2C 50 76 342 - -
Sed07g0840 345 PANTHER PROTEIN PHOSPHATASE 44 335 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed07g0840 345 CDD PP2Cc 70 336 IPR001932 -
Sed07g0840 345 Gene3D - 66 341 IPR036457 -
Sed07g0840 345 Pfam Protein phosphatase 2C 74 329 IPR001932 -
Sed07g0840 345 SUPERFAMILY PP2C-like 70 339 IPR036457 -
Sed07g0840 345 ProSiteProfiles PPM-type phosphatase domain profile. 69 336 IPR001932 -
Sed07g0840 345 ProSitePatterns PPM-type phosphatase domain signature. 102 110 IPR000222 GO:0043169(InterPro)
Sed07g0840 345 SMART PP2C_4 56 334 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0755 Sed-Chr3:4558600 Sed07g0840 Sed-Chr7:6130534 6.30E-31 dispersed
Sed07g0840 Sed-Chr7:6130534 Sed11g2210 Sed-Chr11:35695923 1.70E-64 dispersed
Sed07g0840 Sed-Chr7:6130534 Sed07g0841 Sed-Chr7:6130534 2.50E-111 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0840 K14497 - csv:101214188 507.679