Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0841 ATGTGCGATCTCGAAACTATGGCTAAGACCAAGAATGTTCGCCAGAGACGGATGAGAGTTCCTAAACTGAGGTACAAAGTACACGCTGCGGCGGAAGGTGATCGGGACAGCGAGTTAACCGAAAATGTCGCTTCGGATTCGAGTGGTGATCGAGTTCTAACCTCTGAGAAGGAAGCGATTTCTGTGTTTGATTTTGATTGTGGATTGTACAGCGAGATTTCGATTATAGGGCGGAGGAAGGAGATGGAAGACGAAGTGAGAGTGGAATTGGGATTGACGGCGATGAACGATGAGAAGTACGATTTCTTCGCCGTGTACGACGGCCACGGCGGCGCGCAGGTGGCGCAACTGTGCCGTGAGCGGTTGCACCGGATTGTGGCGGAGGAGATTGTGGATCGAGGGGAGATTGATGCGGCGGAGTGGGGAAGGTTGATGGAGAGGTGCTTTGAGAGAATGGACGATGAAGTGATTAGCGGCGTCGCCGTGATGAAGACGGTCGGCTCGGCGGTGGTTGCGGTGGTTGCCGGAAAAGATGAGGTGGTGGTGGCCAATTGCGGCGATTGTCGAGCCGTTTTGGCTAGGGCTGGAATTTCCTTGCCCTTGTCTGACGATCATAAGGTGCACAATCGAATCAATCACTACATGAGAATAATTATTTGCAATATGTTACGTCAAAAGTTTATTTTAGTTAGGGATTTCAAATTCTTGTGCATAATCAATCTATATTGA 729 49.79 MCDLETMAKTKNVRQRRMRVPKLRYKVHAAAEGDRDSELTENVASDSSGDRVLTSEKEAISVFDFDCGLYSEISIIGRRKEMEDEVRVELGLTAMNDEKYDFFAVYDGHGGAQVAQLCRERLHRIVAEEIVDRGEIDAAEWGRLMERCFERMDDEVISGVAVMKTVGSAVVAVVAGKDEVVVANCGDCRAVLARAGISLPLSDDHKVHNRINHYMRIIICNMLRQKFILVRDFKFLCIINLY 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6130534 6132952 - Sed0015278.2 Sed07g0841 719705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0841 242 CDD PP2Cc 70 220 IPR001932 -
Sed07g0841 242 Gene3D - 66 221 IPR036457 -
Sed07g0841 242 ProSiteProfiles PPM-type phosphatase domain profile. 69 242 IPR001932 -
Sed07g0841 242 PANTHER PROTEIN PHOSPHATASE 42 217 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed07g0841 242 SMART PP2C_4 56 238 IPR001932 -
Sed07g0841 242 Pfam Protein phosphatase 2C 74 210 IPR001932 -
Sed07g0841 242 SUPERFAMILY PP2C-like 70 211 IPR036457 -
Sed07g0841 242 ProSitePatterns PPM-type phosphatase domain signature. 102 110 IPR000222 GO:0043169(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0841 K14497 - - csv:101214188 267.314
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0841 Sed-Chr7:6130534 Sed12g1820 Sed-Chr12:29419803 7.50E-22 dispersed
Sed07g0840 Sed-Chr7:6130534 Sed07g0841 Sed-Chr7:6130534 2.50E-111 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g883 . . . . Bpe03g00182 . . . Cmo16g00068 . . . . . Sed07g0841 . Cpe14g00050 Bhi01g01472 Tan01g0125 Cmetu06g1353 . Hepe07g0077 Mch10g0077 . . . . . . . . Cone1ag0966 Cone5ag0672 . . . . . Cme06g01115 . Blo09g00035 . . . . . . . . . Cma16g00062 . Car16g00056 . . Cpe13g00356 . . . . . . . Cla05g00958 Cam05g1049 Cec05g1054 Cco05g1048 Clacu05g1042 Cmu05g0992 Cre05g1069 . Csa03g02203 Chy06g01234 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006690 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 3 1 1 1 1 1 1 1 1 1 2 3 3 38