Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0850 ATGGGTTATGGCCGCCTCCACGAAGCCGACCCGGGCGGCAGCTCCGGGGCCGTGACCTTCCAACTCTCCGACAACGCCGTTCCCACTCCCAACCGCCGGAAGAAACGCCTCCTTCTCCTCTCCATCTCCTCCGTCGCCCTCATCGTCGCCGCCGCCCTCTCCGCCACCTTCCTCATCGCACTCAAAACCCACTCCCGAACCCGACCCGACCCGGATCTCCCACGAAAACCGACCCAAGCTATTTCCAAGGCCTGCAGCCGAACCCGGTTCCCGGCACTGTGCGTGAACTCGCTCCTCGATTTCCCGGAATCCCAAGCCGCCGGCGAGCGGGATCTGGTCCACATTTCCTTCAACCTAACGCTCCAGCATCTCAGCAGAGCCCTCTATTCCGCCTCCGAGATTTCCCCTCTCGGAATGGATCTCGCCGTCCGATCTGCCTTCGACGCCTGCCTCGAGCTCCTCGACGACTCCGTCGACGCGCTCTCCCGCTCCCTCACCGGCGGCCGATCCGCCGACGACGTCGTCACCTGGCTCAGCGCCGCCCTCACCAACCAGGACACCTGTACGGAAGGATTCGCCCAGCTCTCCGGCGCCGTGAAGGATCAGATGGCGGAGAGGCTCCGGAATCTGTCGGAGCTGATCAGTAACTGCTTGGCGCTGTTTTCCGGCGGCGGGACGGGGGATTTTTCTGGGGTGCCGATTCAGAACAAGCGGCGGTTGTTGAATGACGGCGGCGGTGGTTCTGGTGAGTTTCCGGGGTGGATGAGCCGGAGAGAGCGGCGGTTGCTGACGTTGCCGGTGGCGGCGATTCAGGCGGATATTGTGGTTTCGAAGGATGGGAACGGAACGGTGAAGACGATCGCAGAGGCGATTAAGAAGGCGCCGGAGTACAGTACCAGAAGGACCATTATCTACGTAATGGCAGGAAGGTACGAAGAGAAGAATCTGAAGGTGGGAAGGAAGAAAATCAACCTGATGTTTGTTGGGGATGGGAAGGGTAAAACAGTCATTTCCGGTGCTAAGAGTATCTTTGACAACGTGACAACTTTTCACACCGCATCCTTTGCGGCTACCGGCGCTGGTTTAATCCTAAGGGATATGACATTCGAGAATTGGGCCGGACCTGGTCGACACCAAGCAGTGGCGCTTCGAGTGGGGGCTGACCACGCGGTCATATATCGATGCAACATAATTGGCTACCAAGACACTCTCTACGTCCATTCCAACCGTCAATTCTATAGAGAGTGCGACATTTACGGTACGGTCGATTTCATCTTCGGCAATGCAGCTGTGGTGTTTCAAAACTGCAGCATTTACGCCCGAAAGGCGATGGACCTTCAAAAGAACACGATCACAGCCCAAAACCGAAAGGATCCGAATCAGAACACCGGAATCTCCATCCACGCATGCCGGTTTCTAGCCACCCCCGACTTGATGTCGTCCAATGCCACCAACCCGACGTACTTGGGTCGCCCGTGGAAACTATATTCTCGGGTCGTGATCATGTTATCGGACATCGGGGGCCACGTGCACCCGAGGGGTTGGCTGGAGTGGAACGCCACGTTTGCACTTGACACGCTGTATTATGGTGAGTACATGAACTATGGGCCAGGTGGAGCAGTGGGCCAGAGGGTGACGTGGCCTGGGTACCGTGTCATAACGTCCACGGTGGAGGCGAGCAAGTTCACGGTGGCACAGTTCATTTACGGCTCGTCGTGGCTTCCGTCCACCGGGGTTGCTTTCCTTGGAGGGTTAAATGTGTAA 1764 57.94 MGYGRLHEADPGGSSGAVTFQLSDNAVPTPNRRKKRLLLLSISSVALIVAAALSATFLIALKTHSRTRPDPDLPRKPTQAISKACSRTRFPALCVNSLLDFPESQAAGERDLVHISFNLTLQHLSRALYSASEISPLGMDLAVRSAFDACLELLDDSVDALSRSLTGGRSADDVVTWLSAALTNQDTCTEGFAQLSGAVKDQMAERLRNLSELISNCLALFSGGGTGDFSGVPIQNKRRLLNDGGGGSGEFPGWMSRRERRLLTLPVAAIQADIVVSKDGNGTVKTIAEAIKKAPEYSTRRTIIYVMAGRYEEKNLKVGRKKINLMFVGDGKGKTVISGAKSIFDNVTTFHTASFAATGAGLILRDMTFENWAGPGRHQAVALRVGADHAVIYRCNIIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSIYARKAMDLQKNTITAQNRKDPNQNTGISIHACRFLATPDLMSSNATNPTYLGRPWKLYSRVVIMLSDIGGHVHPRGWLEWNATFALDTLYYGEYMNYGPGGAVGQRVTWPGYRVITSTVEASKFTVAQFIYGSSWLPSTGVAFLGGLNV 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6228990 6232838 + Sed0005649.1 Sed07g0850 719714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0850 587 Gene3D - 267 585 IPR012334 -
Sed07g0850 587 Gene3D Invertase/pectin methylesterase inhibitor family protein 78 223 IPR035513 -
Sed07g0850 587 MobiDBLite consensus disorder prediction 1 21 - -
Sed07g0850 587 PANTHER PECTINESTERASE 38 576 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed07g0850 587 SMART PMEI_2 76 220 IPR006501 GO:0004857(InterPro)
Sed07g0850 587 SUPERFAMILY Pectin lyase-like 268 583 IPR011050 -
Sed07g0850 587 CDD PMEI-like_3 84 222 - -
Sed07g0850 587 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 79 222 IPR035513 -
Sed07g0850 587 FunFam Pectinesterase 267 585 - -
Sed07g0850 587 Pfam Pectinesterase 273 570 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed07g0850 587 Pfam Plant invertase/pectin methylesterase inhibitor 80 220 IPR006501 GO:0004857(InterPro)
Sed07g0850 587 NCBIfam pectinesterase inhibitor domain 54 221 IPR006501 GO:0004857(InterPro)
Sed07g0850 587 ProSitePatterns Pectinesterase signature 2. 418 427 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0850 Sed-Chr7:6228990 Sed09g1726 Sed-Chr9:40469150 1.80E-114 dispersed
Sed01g3493 Sed-Chr1:64019311 Sed07g0850 Sed-Chr7:6228990 6.20E-195 wgd
Sed13g0067 Sed-Chr13:393264 Sed07g0850 Sed-Chr7:6228990 1.70E-234 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0850 - - - 0.0