Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g0856 | ATGGATTTGGATAGCATTGAGTGTGTATCATCTTCAGATGGTTTGGATGAGGATGAGATCCATCTTCATCATACCCTTCATCCTTATTCTCATTCTCATCATCATCTTCATCATCATCCGGAGTTGTCTGCAACGAAGCCTCGTAATGGAAGCAACAATTCCGGTGTTACCGGCCCTACTGCCACTGCCCCGGCCACTAGCGTCCATGAATTGCTCGAGTGCCCTGTCTGTACCAATTCTATGTACCCTCCCATCCACCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACGTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAATCACTGGAATTGCCTTGCAAGTATTATTCTTTGGGATGCCCTGAAATATTTCCATATTACAGTAAGCTTAAGCATGAGGCTTTGTGCAACTTCAGACCGTATAGTTGCCCGTACGCTGGGTCGGAGTGCTCGGCTGTCGGGGATATTCCTTTTCTTGTTGCCCATCTGAGGGACGATCACAAGGTGGACATGCACACTGGTTGCACATTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTTTTCCATTGTTTTGGTCAATATTTCTGCCTCCACTTTGAAGCCTTTCAGCTTGGAATGGCCCCAGCCTATATGGCTTTCCTTCGTTTCATGGGCGATGAGAATGAGGCACGAACCTACAGCTACAGTCTAGAGGTGGGTGGATACGGGCGAAAACTAATATGGGAGGGTACCCCGCGAAGTATTAGAGACAGTCATCGAAAAGTGAGGGACAGCCATGACGGACTAATCATTCAAAGAAACATGGCTCTTTTCTTCTCGGGTGGGGATAGGAAGGAACTGAAGCTGAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCCGATGCCGCAGTCTGCATACCAAACCTGTGTAGCTAA | 1008 | 47.12 | MDLDSIECVSSSDGLDEDEIHLHHTLHPYSHSHHHLHHHPELSATKPRNGSNNSGVTGPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEALCNFRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPAYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAAVCIPNLCS | 335 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 6251036 | 6255233 | - | Sed0024120.1 | Sed07g0856 | 719720 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g0856 | 335 | CDD | RING-HC_SIAHs | 72 | 110 | - | - | |
Sed07g0856 | 335 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 126 | 182 | - | - | |
Sed07g0856 | 335 | CDD | Sina | 188 | 316 | - | - | |
Sed07g0856 | 335 | MobiDBLite | consensus disorder prediction | 45 | 63 | - | - | |
Sed07g0856 | 335 | ProSiteProfiles | Zinc finger RING-type profile. | 74 | 110 | IPR001841 | - | |
Sed07g0856 | 335 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 53 | 317 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) | |
Sed07g0856 | 335 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 126 | IPR013083 | - | |
Sed07g0856 | 335 | Pfam | Sina, zinc finger | 123 | 198 | - | - | |
Sed07g0856 | 335 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 74 | 109 | IPR049548 | - | |
Sed07g0856 | 335 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 181 | 315 | IPR008974 | GO:0005515(InterPro) | |
Sed07g0856 | 335 | SUPERFAMILY | TRAF domain-like | 127 | 319 | - | - | |
Sed07g0856 | 335 | Pfam | Sina, TRAF-like domain | 218 | 315 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Sed07g0856 | 335 | MobiDBLite | consensus disorder prediction | 29 | 63 | - | - | |
Sed07g0856 | 335 | ProSiteProfiles | Zinc finger SIAH-type profile. | 127 | 187 | IPR013010 | GO:0008270(InterPro) | |
Sed07g0856 | 335 | SUPERFAMILY | RING/U-box | 62 | 114 | - | - | |
Sed07g0856 | 335 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 11 | 125 | - | - | |
Sed07g0856 | 335 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 183 | 315 | - | - | |
Sed07g0856 | 335 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 127 | 180 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g0856 | Sed-Chr7:6251036 | Sed09g0524 | Sed-Chr9:5272622 | 1.00E-141 | dispersed | |
Sed07g0856 | Sed-Chr7:6251036 | Sed07g0857 | Sed-Chr7:6251036 | 9.30E-196 | tandem | |
Sed13g0065 | Sed-Chr13:382241 | Sed07g0856 | Sed-Chr7:6251036 | 5.80E-190 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g0856 | K04506 | - | csv:101215696 | 656.751 |