Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0856 ATGGATTTGGATAGCATTGAGTGTGTATCATCTTCAGATGGTTTGGATGAGGATGAGATCCATCTTCATCATACCCTTCATCCTTATTCTCATTCTCATCATCATCTTCATCATCATCCGGAGTTGTCTGCAACGAAGCCTCGTAATGGAAGCAACAATTCCGGTGTTACCGGCCCTACTGCCACTGCCCCGGCCACTAGCGTCCATGAATTGCTCGAGTGCCCTGTCTGTACCAATTCTATGTACCCTCCCATCCACCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACGTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAATCACTGGAATTGCCTTGCAAGTATTATTCTTTGGGATGCCCTGAAATATTTCCATATTACAGTAAGCTTAAGCATGAGGCTTTGTGCAACTTCAGACCGTATAGTTGCCCGTACGCTGGGTCGGAGTGCTCGGCTGTCGGGGATATTCCTTTTCTTGTTGCCCATCTGAGGGACGATCACAAGGTGGACATGCACACTGGTTGCACATTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTTTTCCATTGTTTTGGTCAATATTTCTGCCTCCACTTTGAAGCCTTTCAGCTTGGAATGGCCCCAGCCTATATGGCTTTCCTTCGTTTCATGGGCGATGAGAATGAGGCACGAACCTACAGCTACAGTCTAGAGGTGGGTGGATACGGGCGAAAACTAATATGGGAGGGTACCCCGCGAAGTATTAGAGACAGTCATCGAAAAGTGAGGGACAGCCATGACGGACTAATCATTCAAAGAAACATGGCTCTTTTCTTCTCGGGTGGGGATAGGAAGGAACTGAAGCTGAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCCGATGCCGCAGTCTGCATACCAAACCTGTGTAGCTAA 1008 47.12 MDLDSIECVSSSDGLDEDEIHLHHTLHPYSHSHHHLHHHPELSATKPRNGSNNSGVTGPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEALCNFRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPAYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAAVCIPNLCS 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6251036 6255233 - Sed0024120.1 Sed07g0856 719720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0856 335 CDD RING-HC_SIAHs 72 110 - -
Sed07g0856 335 FunFam E3 ubiquitin-protein ligase SINAT3 126 182 - -
Sed07g0856 335 CDD Sina 188 316 - -
Sed07g0856 335 MobiDBLite consensus disorder prediction 45 63 - -
Sed07g0856 335 ProSiteProfiles Zinc finger RING-type profile. 74 110 IPR001841 -
Sed07g0856 335 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 53 317 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Sed07g0856 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 126 IPR013083 -
Sed07g0856 335 Pfam Sina, zinc finger 123 198 - -
Sed07g0856 335 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 74 109 IPR049548 -
Sed07g0856 335 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 181 315 IPR008974 GO:0005515(InterPro)
Sed07g0856 335 SUPERFAMILY TRAF domain-like 127 319 - -
Sed07g0856 335 Pfam Sina, TRAF-like domain 218 315 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Sed07g0856 335 MobiDBLite consensus disorder prediction 29 63 - -
Sed07g0856 335 ProSiteProfiles Zinc finger SIAH-type profile. 127 187 IPR013010 GO:0008270(InterPro)
Sed07g0856 335 SUPERFAMILY RING/U-box 62 114 - -
Sed07g0856 335 FunFam E3 ubiquitin-protein ligase SINAT3 11 125 - -
Sed07g0856 335 FunFam E3 ubiquitin-protein ligase SINAT5-like 183 315 - -
Sed07g0856 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 180 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0856 Sed-Chr7:6251036 Sed09g0524 Sed-Chr9:5272622 1.00E-141 dispersed
Sed07g0856 Sed-Chr7:6251036 Sed07g0857 Sed-Chr7:6251036 9.30E-196 tandem
Sed13g0065 Sed-Chr13:382241 Sed07g0856 Sed-Chr7:6251036 5.80E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0856 K04506 - csv:101215696 656.751