Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0857 ATGGATTTGGATAGCATTGAGTGTGTATCATCTTCAGATGGTTTGGATGAGGATGAGATCCATCTTCATCATACCCTTCATCCTTATTCTCATTCTCATCATCATCTTCATCATCATCCGGAGTTGTCTGCAACGAAGCCTCGTAATGGAAGCAACAATTCCGGTGTTACCGGCCCTACTGCCACTGCCCCGGCCACTAGCGTCCATGAATTGCTCGAGTGCCCTGTCTGTACCAATTCTATGTACCCTCCCATCCACCAGGATGAGAGCTGTTACGAAGATGCTTGTTTTCTTCCTATATTGTCTTCAAAGTTCAAACATTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACGTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAATCACTGGAATTGCCTTGCAAGTATTATTCTTTGGGATGCCCTGAAATATTTCCATATTACAGTAAGCTTAAGCATGAGGCTTTGTGCAACTTCAGACCGTATAGTTGCCCGTACGCTGGGTCGGAGTGCTCGGCTGTCGGGGATATTCCTTTTCTTGTTGCCCATCTGAGGGACGATCACAAGGTGGACATGCACACTGGTTGCACATTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTTTTCCATTGTTTTGGTCAATATTTCTGCCTCCACTTTGAAGCCTTTCAGCTTGGAATGGCCCCAGCCTATATGGCTTTCCTTCGTTTCATGGGCGATGAGAATGAGGCACGAACCTACAGCTACAGTCTAGAGGTGGGTGGATACGGGCGAAAACTAATATGGGAGGGTACCCCGCGAAGTATTAGAGACAGTCATCGAAAAGTGAGGGACAGCCATGACGGACTAATCATTCAAAGAAACATGGCTCTTTTCTTCTCGGGTGGGGATAGGAAGGAACTGAAGCTGAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCCGATGCCGCAGTCTGCATACCAAACCTGTGTAGCTAA 1068 46.44 MDLDSIECVSSSDGLDEDEIHLHHTLHPYSHSHHHLHHHPELSATKPRNGSNNSGVTGPTATAPATSVHELLECPVCTNSMYPPIHQDESCYEDACFLPILSSKFKHCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEALCNFRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPAYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAAVCIPNLCS 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6251036 6255233 - Sed0024120.2 Sed07g0857 719721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0857 355 Pfam Sina, TRAF-like domain 238 335 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Sed07g0857 355 FunFam E3 ubiquitin-protein ligase SINAT3 144 202 - -
Sed07g0857 355 CDD Sina 208 336 - -
Sed07g0857 355 CDD RING-HC_SIAHs 72 130 - -
Sed07g0857 355 SUPERFAMILY TRAF domain-like 147 339 - -
Sed07g0857 355 MobiDBLite consensus disorder prediction 45 63 - -
Sed07g0857 355 FunFam E3 ubiquitin-protein ligase SINAT5-like 203 335 - -
Sed07g0857 355 ProSiteProfiles Zinc finger SIAH-type profile. 147 207 IPR013010 GO:0008270(InterPro)
Sed07g0857 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 200 IPR013083 -
Sed07g0857 355 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 53 337 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Sed07g0857 355 MobiDBLite consensus disorder prediction 29 63 - -
Sed07g0857 355 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 201 335 IPR008974 GO:0005515(InterPro)
Sed07g0857 355 Pfam Sina, zinc finger 143 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0857 Sed-Chr7:6251036 Sed13g0065 Sed-Chr13:382241 3.70E-187 dispersed
Sed07g0856 Sed-Chr7:6251036 Sed07g0857 Sed-Chr7:6251036 9.30E-196 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0857 K04506 - csv:101215696 644.81