Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0871 ATGGAGAAGTCTAGATCTAAGAGAAATTACTACTATGATCACGAAGATTATGATTCGGAGCCGATGGGAAGAACCAGACCTCGTTACAACAATCACTACGCCAGTAATAACTATCGTCACCGCGGAAGTGCTGTTCGACCTTCAAAACCTCAGGATCAATCTCTAATGGTGACCACAACTTACAGGATTCTCTGTCACGACGGTAAGGCCGGCGGAGTTATCGGCAAATCTGGTAGTATTATTAAGTCTATAAGGCAGCACACCGGCGCGTGGATCAACGTCCTCGAGCTTGCTCCGACGGATGAGGAGAGGATCATTGAGATATCGGATACTCGGCGGAGGGACCCGGATGGTCGAATGCCGTCGTTTTCGCCTGCCCAAGAGGCGTTGTTCTTGATTCATGAGAGGATTTTGGAGAGTGAAATGGGTTCTGGGTTTAATGGAATGGGGTATGGTGGTGAGGATGAGGAGGATGATTACGACGGCGGTGGCGTTAGAGGTGGCAGTGGCGGTGGCCGTGTGGCAACGAGGCTTGTTGTGTCGAGAATGCACGTTGGGTGTTTGTTGGGGAAGGGAGGGAAGATAATTGAACAAATGAGGATGGAAACCAAGACCCAGATTAGGGTTCTACCTAGAGATCACAATTTGCCTCGTTGCATTTCAATGTCGGAGGAGATTGTTCAGATTGTTGGGGATGCAAATGCCGTAAAGAAAGCTGTAGCTATCATTTCATCACGCTTGAGAGAGAGTCAGCATCGCGACCGTAGTCATTTCCATGGACGTCTACATTCACCGGAGCGTATGTTCCCTCCTGATGATGATTATGTTCCACATACAGGACGACGATTATCAATGGATGGACGCCCATTTAGACCACGTATGTCTGCTTCTAATACAAGAGGCAATGATTATTCCAACCATCGATCGAGTTTCTCGATGGAGCCGGGGGCTCCTCCTGTTAATGACAATATGATGCCCTTTTATGGTGAGGACCTTGTATTTAGAATATTATGCCCAATTGATAAGGTTGATAGTGTTATTGGAGAGTCTGATGGAATCATAGAATTACTTCGGAATGAAGTTGGTGTGGATATCAGAGTTTCGGACCTTGAGACTGGTTCAAATGAACAGATTATTATCATTTCCTCGAACGAGGGTCCAGATGATGAGCTTTTTCCAGCACAGGAAGCTTTATTACACATCCAAACTCGCATCGTTGATCTTGTTCCTGACAAGGATAACATTGTAACTACTAGGTTACTTGTCCCTTCGAGTGATATTGAATGTTTGGAGGGAAGAGATGGATTGTTAGAGATGAAAAGATTAACTGGTGCAAATGTACAAATTGTGCCAAGAGAAGAACTTCCCATGTTTGTATCAGGGGCTGATGAGCTTGTCCAGATCATAGGCGACATAAAAGCAGCTCGAGATGCACTTGTTGAGTTAACATCAAGATTGCAGAATTATATTTATAATGAGCCTTATCAAAAAGATGCAAGTCCTCCAGTCTCAGTACCCAGCACCATGGCCAGTGTACGACTCGATGAATCATCTTCGAATAATAATGCTGCTCCTCGTGAAGTTCTTAGTGGAAATGACTCTTCTAGCACGGCCTATCAAAATATTCAACCTTTTGGAACAGCACAGCTTCTAAAGGTTACTTGTTTACTCATCTTTTTTTCTTCTCTCTTTACGAGGGGATTCTTTCTTTTCAAAACAGTTTCTTCTCAGCCATTACGAGTGGAGGCACTTGCTTTCCTTGGATACGAAACTATTTCAGAGTAA 1785 44.48 MEKSRSKRNYYYDHEDYDSEPMGRTRPRYNNHYASNNYRHRGSAVRPSKPQDQSLMVTTTYRILCHDGKAGGVIGKSGSIIKSIRQHTGAWINVLELAPTDEERIIEISDTRRRDPDGRMPSFSPAQEALFLIHERILESEMGSGFNGMGYGGEDEEDDYDGGGVRGGSGGGRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRVLPRDHNLPRCISMSEEIVQIVGDANAVKKAVAIISSRLRESQHRDRSHFHGRLHSPERMFPPDDDYVPHTGRRLSMDGRPFRPRMSASNTRGNDYSNHRSSFSMEPGAPPVNDNMMPFYGEDLVFRILCPIDKVDSVIGESDGIIELLRNEVGVDIRVSDLETGSNEQIIIISSNEGPDDELFPAQEALLHIQTRIVDLVPDKDNIVTTRLLVPSSDIECLEGRDGLLEMKRLTGANVQIVPREELPMFVSGADELVQIIGDIKAARDALVELTSRLQNYIYNEPYQKDASPPVSVPSTMASVRLDESSSNNNAAPREVLSGNDSSSTAYQNIQPFGTAQLLKVTCLLIFFSSLFTRGFFLFKTVSSQPLRVEALAFLGYETISE 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6295315 6300631 + Sed0003761.3 Sed07g0871 719735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0871 594 Gene3D K Homology domain, type 1 171 252 IPR036612 GO:0003723(InterPro)
Sed07g0871 594 MobiDBLite consensus disorder prediction 1 26 - -
Sed07g0871 594 Gene3D K Homology domain, type 1 57 140 IPR036612 GO:0003723(InterPro)
Sed07g0871 594 Pfam KH domain 60 109 IPR004088 GO:0003723(InterPro)
Sed07g0871 594 Pfam KH domain 334 385 IPR004088 GO:0003723(InterPro)
Sed07g0871 594 Pfam KH domain 177 244 IPR004088 GO:0003723(InterPro)
Sed07g0871 594 CDD KH-I_PEPPER_rpt2_like 176 248 - -
Sed07g0871 594 MobiDBLite consensus disorder prediction 514 535 - -
Sed07g0871 594 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 51 112 IPR036612 GO:0003723(InterPro)
Sed07g0871 594 Gene3D - 330 491 - -
Sed07g0871 594 ProSiteProfiles Type-1 KH domain profile. 331 398 - -
Sed07g0871 594 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 408 496 IPR036612 GO:0003723(InterPro)
Sed07g0871 594 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 38 501 - GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER)
Sed07g0871 594 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 330 436 IPR036612 GO:0003723(InterPro)
Sed07g0871 594 CDD KH-I_PEPPER_rpt1_like 58 131 - -
Sed07g0871 594 ProSiteProfiles Type-1 KH domain profile. 58 130 - -
Sed07g0871 594 SMART kh_6 414 487 IPR004087 GO:0003676(InterPro)
Sed07g0871 594 SMART kh_6 330 403 IPR004087 GO:0003676(InterPro)
Sed07g0871 594 SMART kh_6 172 248 IPR004087 GO:0003676(InterPro)
Sed07g0871 594 SMART kh_6 57 138 IPR004087 GO:0003676(InterPro)
Sed07g0871 594 CDD KH-I_PEPPER_rpt1_like 331 399 - -
Sed07g0871 594 MobiDBLite consensus disorder prediction 295 311 - -
Sed07g0871 594 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 171 254 IPR036612 GO:0003723(InterPro)
Sed07g0871 594 MobiDBLite consensus disorder prediction 1 25 - -
Sed07g0871 594 ProSiteProfiles Type-1 KH domain profile. 173 243 - -
Sed07g0871 594 MobiDBLite consensus disorder prediction 281 311 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0871 K21444 - - csv:101217605 914.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0869 Sed-Chr7:6295315 Sed07g0871 Sed-Chr7:6295315 0.00E+00 dispersed
Sed07g0871 Sed-Chr7:6295315 Sed13g0048 Sed-Chr13:306069 8.30E-272 dispersed
Sed07g0870 Sed-Chr7:6295315 Sed07g0871 Sed-Chr7:6295315 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1025 . . . . Bpe03g00230 . . . Cmo16g00045 . . . . . Sed07g0871 . Cpe14g00031 Bhi01g01505 Tan01g0081 Cmetu06g1355 . Hepe07g0050 Mch10g0048 . . . . . . . . Cone1ag0995 Cone5ag0699 . . . . . Cme06g01156 Blo07g00331 . . . . . . . . . . Cma16g00038 Cma18g01323 Car16g00038 Car18g01235 . . . . . . . . . Cla05g00979 Cam05g1071 . . . . Cre05g1090 . Csa03g01974 Chy06g01186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007315 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 37