Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0879 ATGATCGCCACCGGCACCGCCTTCATCCGCTCCTTCGGCGGCGGCGGCGGCTTCTTCTCCCGGATCATGGCCAGCGCTCACCCGAACACAGCCATCGCCGTCACCACCTTGGCCGGCCTTGCGGTGGTCGCCGTTCTCTTCTACTCTGCGAATAGGGGACGCCTTAAATCGCCTTGGTCACGCAGGAAAAGAAAGCTCGCTCTTTCGCCGCAAAAATGGAGGAGTTTGTTTATGCCCGACGGGAAACTTCGAGATGGTGGCATTAGGTTTTTGAAAAAAGTTCGCAGTGGAGGTGTTGATCCAAGTATTAGGGCAGAGGTTTGGCCATTCCTTCTTGGAGTCTATGACTTAAGCAGTTCCGAAGAAGAAAGAGATGCCGTAAGAGTGCAGAAGAGGAAAGAATACGAAAGACTTCGCAAACAATGCCGATCCTTGATGAAGTTTGGGGATAGGAGTATGAAGTTGAATGAGGATGAGTTGAACTGCAACAAGGAGAGGGACAATCAGCATGCTGCTCGTGGTGACAACTCTCCAATGAACTGCAACAAAGAGGGGGACAATCAGCATGTTGCTCATGGTGATGACTCTCCAATGAACTGCAACAAGGAGGGGGACAGTCAAAATGTTGCTCATGGGGATGACTCTCCTAGTTTGGAAGATGTGGTTAGTGCTAGCGAATCTATTTCTACTGATGAAGGGGGTTCAAAGTTTAGATACTTGGATGAATCCTCGGGAGTTTTGTTGGAAGAGGATGGAAGCTCTAGAGAGATGACAAATGCTGATACTTCTGTTCTTAATACTGAATCATCCGACTCAGATTCCTCTGAGGATCCTGAAGTTAGTCAAACATTCCCTTCCTCTGATAGTAGAGAAGATAATGATCCTGACTCATCACCTATGGTAACAGAGGTCACATCAAAATTTCGCAGTAAGGAAGACTTTACAACATGGCAGCGGATCATCCGTCTTGATGCAGTACGTGCAAATGAAGAATGGATAGCGTACGCACCATCCCAAGCTGCGGTATCAGATGATAAGGCTAGACATTCTGCAGAGGTTGTTGGTTTGAAAGATTACGATCACCTAGAAGCCTCCAGGATTTTTCATGCTGCTAGGTTGGTCACCATTCTTGAAGCCTATGCTCTTTATGATCCTGAAATTGGGTATTGCCAAGGAATGAGTGATTTGCTTTCGCCTATAATTACTGTGATAACTGAAGACCATGAGGCATTCTGGTGCTTTGTAGGCTTCATGCGGAAAGCTCGACATAACTTTAGGCTTGATGAGGTTGGGATTCGGAAGCAACTGAACATTGTATCAAAGATCATCAAATTCAAAGACTCCCACCTTTACAGACACCTGCAAGACCTCGAAGCGGCAGATTGCTTTTTTGTTTATAGGATGGTTGTGGTACTCTTTAGAAGGGAATTAACATTTGAACAGACTCTATGCCTATGGGAGGTCATGTGGGCTGATCAGGCTGCTATTAGAGCTGGTGTAGGTAAATCAGCTTGGAGCAGAATTAGGCAACGAGCCCCGCCCACGGAGGACCTGCTGCTCTACGCAATTGCTGCCTCGGTATTGCAGAAGAGGAAGTTAATTATAGAGAAATACAACAGCATGGACGAAATAATAAGGGAGTGTAACAGCATGGCGGGGAAACTTGATGTATGGAAACTATTGGATGGTGCTCATGATTTGGTGGTGACCCTCCACGAGAAGATCGAAACCTCATTCAACAAGTAA 1746 46.62 MIATGTAFIRSFGGGGGFFSRIMASAHPNTAIAVTTLAGLAVVAVLFYSANRGRLKSPWSRRKRKLALSPQKWRSLFMPDGKLRDGGIRFLKKVRSGGVDPSIRAEVWPFLLGVYDLSSSEEERDAVRVQKRKEYERLRKQCRSLMKFGDRSMKLNEDELNCNKERDNQHAARGDNSPMNCNKEGDNQHVAHGDDSPMNCNKEGDSQNVAHGDDSPSLEDVVSASESISTDEGGSKFRYLDESSGVLLEEDGSSREMTNADTSVLNTESSDSDSSEDPEVSQTFPSSDSREDNDPDSSPMVTEVTSKFRSKEDFTTWQRIIRLDAVRANEEWIAYAPSQAAVSDDKARHSAEVVGLKDYDHLEASRIFHAARLVTILEAYALYDPEIGYCQGMSDLLSPIITVITEDHEAFWCFVGFMRKARHNFRLDEVGIRKQLNIVSKIIKFKDSHLYRHLQDLEAADCFFVYRMVVVLFRRELTFEQTLCLWEVMWADQAAIRAGVGKSAWSRIRQRAPPTEDLLLYAIAASVLQKRKLIIEKYNSMDEIIRECNSMAGKLDVWKLLDGAHDLVVTLHEKIETSFNK 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6353742 6362315 - Sed0009566.1 Sed07g0879 719743

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0879 581 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 89 562 - GO:0005096(PANTHER)|GO:0090630(PANTHER)
Sed07g0879 581 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 73 453 IPR035969 -
Sed07g0879 581 SMART tbc_4 95 538 IPR000195 -
Sed07g0879 581 FunFam Ypt/Rab-GAP domain of gyp1p superfamily protein 295 425 - -
Sed07g0879 581 ProSiteProfiles TBC/rab GAP domain profile. 98 493 IPR000195 -
Sed07g0879 581 MobiDBLite consensus disorder prediction 257 288 - -
Sed07g0879 581 FunFam GTPase-activating protein gyp7 isoform X1 429 574 - -
Sed07g0879 581 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 430 567 IPR035969 -
Sed07g0879 581 Gene3D - 429 575 - -
Sed07g0879 581 Pfam Rab-GTPase-TBC domain 372 492 IPR000195 -
Sed07g0879 581 MobiDBLite consensus disorder prediction 167 305 - -
Sed07g0879 581 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 297 425 - -
Sed07g0879 581 MobiDBLite consensus disorder prediction 235 249 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0879 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0879 Sed-Chr7:6353742 Sed07g1927 Sed-Chr7:33688012 2.30E-32 dispersed
Sed07g0879 Sed-Chr7:6353742 Sed07g0880 Sed-Chr7:6353742 8.30E-277 tandem
Sed01g3464 Sed-Chr1:63755955 Sed07g0879 Sed-Chr7:6353742 1.00E-188 wgd
Sed13g0037 Sed-Chr13:226921 Sed07g0879 Sed-Chr7:6353742 1.70E-250 wgd
Sed05g0384 Sed-Chr5:2618077 Sed07g0879 Sed-Chr7:6353742 2.00E-187 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g943 . . . . . . . . . . . . . . Sed07g0879 . Cpe14g00008 Bhi01g01526 Tan01g0051 Cmetu06g1634 . . . . . . . . . . . Cone1ag1033 . . . . . . . . . . . . . . . . . . Cma16g00008 Cma18g01348 . . Cpe09g00004 . Bhi12g00772 . . Lac11g0080 Hepe06g0729 . Lcy12g0062 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001494 2 4 2 1 1 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 3 2 72