Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0886 ATGGGAGAGGAAGTGAAGCTGTTGGATTGTTGGGCAAGCATGTTTGGGATGCGAGTCAGGGTAGCCCTAGCGATGAAGGGCGTGCCCTACCAAAATGTGGAACAAGATCTGATGAACAAGAGCCCTTTGCTTCTCCAAATGAACCCACTTCACAAAAAGGTCCCTGTTCTTGTTCATAATGGAAAACCCATTTGTGAATCTTCCATTATTGTTCAATACATAGATGAAATCTGGAAGGACAAGGCTCCTCCTCTCTTGCCCTCTGATCCTTATGATAGAGCTCAGGCTAAGTTCTGGGTTGATTTCATTGACAAAAAGCTTTATGATGCTACAAAGAAGATATGGGGGAGCAAGGGAGAGGAACATGAGGCAGGGAAGAAGGAGATGATAGCAATTTTGAAGCAATTGGAAGAAGTGATTGGGGACAAAGCTTACTTTGGAGGTGAGTGTTTGGGATTTGTTGACATTGCTTTGATTGGATTCTATGCTTGGTTTTATAGCTATGAAACCATTGGAAACTTTAGCATTGAGGCTGAGTGTCCCAAGACAATGGATTGGGCCAAGAGATGCTTGCAAAATGAGAGTGTTTCTAAGTCCTTGCCTGACCCCAAGAAGGTCTATGACTTTATGCTTCAAGTCAAGAAAGTGCTTGGCCTTGACTAG 663 43.59 MGEEVKLLDCWASMFGMRVRVALAMKGVPYQNVEQDLMNKSPLLLQMNPLHKKVPVLVHNGKPICESSIIVQYIDEIWKDKAPPLLPSDPYDRAQAKFWVDFIDKKLYDATKKIWGSKGEEHEAGKKEMIAILKQLEEVIGDKAYFGGECLGFVDIALIGFYAWFYSYETIGNFSIEAECPKTMDWAKRCLQNESVSKSLPDPKKVYDFMLQVKKVLGLD 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6394236 6396699 + Sed0001086.1 Sed07g0886 719750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0886 220 Gene3D - 89 220 - -
Sed07g0886 220 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Sed07g0886 220 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 209 IPR010987 -
Sed07g0886 220 SUPERFAMILY GST C-terminal domain-like 76 215 IPR036282 -
Sed07g0886 220 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 210 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Sed07g0886 220 FunFam Tau class glutathione S-transferase 1 86 - -
Sed07g0886 220 SFLD Main.3: Omega- and Tau-like 2 217 IPR045073 -
Sed07g0886 220 FunFam Glutathione S-transferase U20 89 220 - -
Sed07g0886 220 Gene3D Glutaredoxin 1 88 - -
Sed07g0886 220 CDD GST_C_Tau 90 212 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Sed07g0886 220 Pfam Glutathione S-transferase, C-terminal domain 118 192 IPR004046 -
Sed07g0886 220 SUPERFAMILY Thioredoxin-like 5 108 IPR036249 -
Sed07g0886 220 CDD GST_N_Tau 5 78 - -
Sed07g0886 220 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Sed07g0886 220 SFLD Main (cytGST) 2 217 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0886 Sed-Chr7:6394236 Sed13g0673 Sed-Chr13:4642427 1.10E-80 dispersed
Sed07g0886 Sed-Chr7:6394236 Sed07g0887 Sed-Chr7:6397936 3.30E-93 tandem
Sed03g0911 Sed-Chr3:5617202 Sed07g0886 Sed-Chr7:6394236 1.30E-65 transposed
Sed06g0723 Sed-Chr6:7071607 Sed07g0886 Sed-Chr7:6394236 2.60E-37 transposed
Sed13g0672 Sed-Chr13:4630270 Sed07g0886 Sed-Chr7:6394236 2.40E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0886 K00799 - csv:101217848 369.392