Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0887 ATGGGTGAAGAAGTGAAACTGTTGGATTTTTGGGCAAGCATGTTTGGGATGAGAGTCAGGGTAGCCCTTGCCCTGAAGGGTGTGCCCTACGAATATGTGGATGAAGATCTCAGGAACAAGAGCCCTTTGCTTCTCCAAATGAACCCACTTCACAAAAAGATCCCTGTTCTCATTCATAATGGAAAACCCATTTGTGAATCTTCCATTATTGTTCAATACATTGATGAAATCTGGAAGGACAAAGCTCCTCTCTTGCCTTCTCATCCTTACGAGAGGGCTCAGGCCAGGTTTTGGGTGGATTTCATTGACAAAAAGCTTTTTGATGCTGGGAGGAAGATTTGGGCAACCAAGGGAGTGGAGCAAGAAGAAGGCAAGAAGGGCTTTATAGGAATTTTAAAGCAACTTGAAGAAGTTCTTGGAGATAAGGCTTACTTTGGAGGTGAGTGTTTGGATATTTTAGACATTGTTTTGATTGGATACTACACTTGGTTTTATAGCTATGAATCTATTGGGAACTTCAGCATTGAGGCTGAGTGTCCCAACATAATGGCTTGGGCTAAGAGATGCTTGCAAAATGACACTGTTTCCAACCCTTTTGCCATAAGGGTGAGAGTGGCTTTGGCAGAAAAGGGGATAAAGTATGAGGCAAAAGAGGAAGATTTGAGCAACAAAAGCCCTTTGCTTTTGGAGATGAACCCTTTGTACAAACAAGTCCCTGTTTTGATTCACAAAGGAAACCCCATTATTGAGTCTCTTATCATAATTGAATATATTGATGAGACTTGGAGTGGTGATCATGGAGCTTACCCTAATTTGCTTCCTTCTCATCCTTATGAGAGATCCCATGCTAGGTTTTGGGCTGACTATGTGGAAAAGAAGATTTATCCAATTGGAGGTAAGCTATGGTACAATGGAGAGAAGCCAGAAGAGGAGAGAGAAGCAATTGGAAAGGAACTATTGGTGAGCTTTAAGCAGCTAGAAGAAGAGCTTGGAGAAAAGGAATATTTTGGGGGCCAAACATTTGGGCTCATAGATATTGCTCTAATTCCATTTTACTCCATGTTTCTTGCATTCAAATTGGTTGGAAAATTGGACTTGGAAGTTGAATGTCCCAACATCTTACAATGGGCTAAGAGGTGCCTCCAAAGAGAGAGTGTCTCAAAGAATATGCCTACTCAACAAGAGGTTTACGATGTCAACCGACCTTTTTGTGTCTCTAAATTAAATGATATCTCTGCAGAAAACAGCCTTTTACCAAATAAAAAGATGTGA 1272 41.04 MGEEVKLLDFWASMFGMRVRVALALKGVPYEYVDEDLRNKSPLLLQMNPLHKKIPVLIHNGKPICESSIIVQYIDEIWKDKAPLLPSHPYERAQARFWVDFIDKKLFDAGRKIWATKGVEQEEGKKGFIGILKQLEEVLGDKAYFGGECLDILDIVLIGYYTWFYSYESIGNFSIEAECPNIMAWAKRCLQNDTVSNPFAIRVRVALAEKGIKYEAKEEDLSNKSPLLLEMNPLYKQVPVLIHKGNPIIESLIIIEYIDETWSGDHGAYPNLLPSHPYERSHARFWADYVEKKIYPIGGKLWYNGEKPEEEREAIGKELLVSFKQLEEELGEKEYFGGQTFGLIDIALIPFYSMFLAFKLVGKLDLEVECPNILQWAKRCLQRESVSKNMPTQQEVYDVNRPFCVSKLNDISAENSLLPNKKM 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6397936 6405288 + Sed0020168.1 Sed07g0887 719751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0887 423 Gene3D - 87 194 - -
Sed07g0887 423 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 276 403 IPR010987 -
Sed07g0887 423 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 187 266 IPR004045 -
Sed07g0887 423 Pfam Glutathione S-transferase, C-terminal domain 291 384 IPR004046 -
Sed07g0887 423 SFLD Main (cytGST) 2 196 - -
Sed07g0887 423 SUPERFAMILY GST C-terminal domain-like 260 400 IPR036282 -
Sed07g0887 423 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Sed07g0887 423 FunFam Tau class glutathione S-transferase 1 87 - -
Sed07g0887 423 CDD GST_N_Tau 198 262 - -
Sed07g0887 423 SUPERFAMILY GST C-terminal domain-like 76 197 IPR036282 -
Sed07g0887 423 CDD GST_C_Tau 277 401 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Sed07g0887 423 CDD GST_C_Tau 89 195 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Sed07g0887 423 SFLD Glutathione Transferase (cytosolic) 196 398 IPR040079 -
Sed07g0887 423 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 227 IPR010987 -
Sed07g0887 423 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Sed07g0887 423 Pfam Glutathione S-transferase, N-terminal domain 195 260 IPR004045 -
Sed07g0887 423 SUPERFAMILY Thioredoxin-like 197 295 IPR036249 -
Sed07g0887 423 Pfam Glutathione S-transferase, C-terminal domain 122 188 - -
Sed07g0887 423 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
Sed07g0887 423 Gene3D Glutaredoxin 195 275 - -
Sed07g0887 423 Gene3D Glutaredoxin 1 86 - -
Sed07g0887 423 SFLD Main.3: Omega- and Tau-like 2 196 IPR045073 -
Sed07g0887 423 SFLD Main.3: Omega- and Tau-like 196 398 IPR045073 -
Sed07g0887 423 CDD GST_N_Tau 5 78 - -
Sed07g0887 423 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 195 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Sed07g0887 423 Gene3D - 276 405 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0911 Sed-Chr3:5617202 Sed07g0887 Sed-Chr7:6397936 2.20E-60 dispersed
Sed07g0887 Sed-Chr7:6397936 Sed13g0672 Sed-Chr13:4630270 4.20E-153 dispersed
Sed07g0886 Sed-Chr7:6394236 Sed07g0887 Sed-Chr7:6397936 3.30E-93 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0887 K00799 - csv:101217848 358.607