Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0888 ATGGACGACGATTACTCCATCTTCCCTCCGGATTCAGATCTGGACTTCAGTTTCACCTCCACCGCCACCGACCGCACCTTCGCCTCCTCCACCAGCGCCCGCACCAGCCTCACCCTCAGCTTCAACGAATCCCGCCTCTCCTCCTCCTCCGCCTCCGCCGTCCACCTCTCCGACCCACACTGGTCCGCCATCAAGGCCGCCACCACCCTCTCCTCCGACGGCCAACTCCACCTCCGCCACCTCAAGCTCATCCGCCACCTCGGCACCGGCAACCTCGGCCGCGTCTTCCTCTGCCACTTGCGCGACAACGACCACGCCAGCTTCGCCCTCAAGGTGGTCGACCGAGAGGCCTTGACCAACAAGAAGCTGCTGCAGGTCCAAACCGAAGCCCAGATTCTGGGTTTGCTAAACCACCCCTTTCTCCCCACTCTCTACGCGCGCCTCGACGTCTCCCACTACACGTGCCTCCTCATCGACTACTGCCCCGCCGGCGACCTCCACTCCCTCCTCCGCAAGCAGCCGCAATCCCGCTTCTCCGTCCCGGCGGCCAGATTCTTCGCCGCTGAGACCCTGGTGGCGCTCGAGTACCTCCACGCCCTCGGCGTCGTGTACCGCGATTTGAAACCCGAGAACGTCCTCTTGCGTGACGACGGCCACGTCATGCTCTCGGATTTCGATTTGTGCTTTACCTCTCATGTGGTCCCCACTTTCCACACGTGGACTAAGCCGGGACCGGGTCCACGTCGCCGTGGTGGTGGTGGTTGCTGTTTTGGGTTTGGCGCCGCGGAGGAGGAGGAGGTGGTGGGGGAGTTCGTGGCCGAGCCCACGGCGGCGTTTTCGAAATCCTGTGTGGGGACTCATGAGTATTTGGCGCCGGAGTTGGTTTCCGGCGGCGGCCACGGCAGCGGCGTCGACTGGTGGGCGTTTGGGGTGTTTCTTTACGAGCTCTTGCACGGGACCACGCCGTTTAAGGGAGTGAACAAGGAGGGGACGCTTAGGAATATTGCGTCGTCGGAGGGGGTGAAGTTCCGGTCGTCGGCGGCGGCGGAGGAAGAGGAGGGGATGGCGGAGGCGAGGGATCTGATAGAGAGGCTACTGGTGAGGGATCCGGCGAGGCGGTTGGGCTCCGGCAAAGGGGCGACGGAGATCAAGCGGCATCCGTTCTTCGACGGGATAAAGTGGCCGTTGATCCGGACGTACCGGCCGCCGGAGGTGTATGGGCTTATGAGAAAAACCAGATCGCACGTGAGCCACGTGACTGGCGTCAGCCACCGCACGCGGCGGCGGGGCTGGTGGAACTGGAGGAAGCTCAGTAACTGTTTGATTAAAAATGGAAATTCCAGTAAATCTCATAACAATACCAATTATTACAGTTATAGCACCAAAAATAAGAAGGGTTAA 1401 61.31 MDDDYSIFPPDSDLDFSFTSTATDRTFASSTSARTSLTLSFNESRLSSSSASAVHLSDPHWSAIKAATTLSSDGQLHLRHLKLIRHLGTGNLGRVFLCHLRDNDHASFALKVVDREALTNKKLLQVQTEAQILGLLNHPFLPTLYARLDVSHYTCLLIDYCPAGDLHSLLRKQPQSRFSVPAARFFAAETLVALEYLHALGVVYRDLKPENVLLRDDGHVMLSDFDLCFTSHVVPTFHTWTKPGPGPRRRGGGGCCFGFGAAEEEEVVGEFVAEPTAAFSKSCVGTHEYLAPELVSGGGHGSGVDWWAFGVFLYELLHGTTPFKGVNKEGTLRNIASSEGVKFRSSAAAEEEEGMAEARDLIERLLVRDPARRLGSGKGATEIKRHPFFDGIKWPLIRTYRPPEVYGLMRKTRSHVSHVTGVSHRTRRRGWWNWRKLSNCLIKNGNSSKSHNNTNYYSYSTKNKKG 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6408932 6410534 - Sed0014130.1 Sed07g0888 719752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0888 466 Coils Coil 348 368 - -
Sed07g0888 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g0888 466 SMART serkin_6 81 389 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0888 466 PANTHER FLIPPASE KINASE 1-RELATED 34 408 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed07g0888 466 Gene3D Transferase(Phosphotransferase) domain 1 165 230 - -
Sed07g0888 466 ProSiteProfiles Protein kinase domain profile. 81 389 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0888 466 FunFam Serine/threonine-protein kinase OXI1 165 232 - -
Sed07g0888 466 Gene3D Phosphorylase Kinase; domain 1 80 164 - -
Sed07g0888 466 SUPERFAMILY Protein kinase-like (PK-like) 79 455 IPR011009 -
Sed07g0888 466 FunFam Serine/threonine-protein kinase OXI1 278 407 - -
Sed07g0888 466 Pfam Protein kinase domain 83 228 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0888 466 Pfam Protein kinase domain 280 389 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0888 466 Gene3D Transferase(Phosphotransferase) domain 1 280 403 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0888 Sed-Chr7:6408932 Sed12g0019 Sed-Chr12:123872 1.20E-89 dispersed
Sed07g0888 Sed-Chr7:6408932 Sed14g0203 Sed-Chr14:2300808 2.30E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79437 PF00069 Pkinase 1.10E-31 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0888 - - - 0.0