Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0918 ATGCTATCTCAACCCTTTGACTTCAAGTGCATCCTATTTGTACATTTCTTCTTCACTTCAACTCTTCAATTTTCATCCCATCCCTATATTTTATACCCAAAATTTGCATATATAATTAGGATTTGTACATTTCTACACTCTTCTCCATATACTCCACAAATCATGAATACTAATCTACTCACTAACATTTTCCTTTCCTCTCTCATCCCTCTCCTTGCTTTCCTCCTCATCAATCCCACTCCTCGCTTTCTCTACGACCATGCCGCCCTCGACTTCACCTTCCTTGACGACTCCATCAGTTGTCATCACCATCATCATAAAAGCTCGACAGATGACGATGAAGATGAAAACCAATCAACTATCAATTCCATTTGTGACATGTTCCCGACAAGTCTTCTCCCACCAGAAACCAACAACACTTCGGTCTTCTGTGTCGATCGAAATGGATGTTGTAACTTCACGACAGTTCAGGCTGCTGTCGATGCAGTGCCAAACATGAGTCTGAAAAGAAGCTTGATATGGATTAATAGTGGAATCTACTATGAGAAGGTAATGGTTGCAAGATCAAAACCTAACGTGACATTTCAAGGACAAGGCTACTTAACCACAGCTATTGTTTGGAATGACACAGCCAACTCTTCCCATGGGACCTTTTATAGTGGCTCTGTCCAAGTCTTCTCCACCAATTTTATTGCCAAAAATATAAGCTTCATGAATGTGGCCCCAATTCCAGGGCCGGGCGACATCGGAGCACAGGCGGTGGCGATAAGAATCGGCGGCGACCAGGCAGCGTTTTGGAGCTGCGGATTCTTCGGCGCTCAAGACACTCTCCACGACGACCGTGGCCGCCATTACTTCAAGGATTGCTACATCCAAGGCTCCATCGATTTCATCTTCGGCAATGGAAAATCCTTCTACGAGAGTTGCCAGTTGATCTCGATGGCGAATCCGGTGCCGCAAGGATCGAAGTTTGTGAATGGAGCCGTGACGGCACACGGCAGAGCCTCCGCTGACGAGAACTCTGGATTTTCGTTTGTTAATTGCAGCATCGGCGGCACCGGCAGGGTGTGGCTCGGCCGTGCGTGGCGGCCGTTCTCCAGCGTCGTCTTCGCCAACACCATCATGACGGATATCATTGCGCCTGAGGGATGGAATGACTTTAATGACCCTGCCAGAGACCAGACAATTTTCTACGGAGAATACAACTGCAGTGGAACAGGAGCCAACATGAGTGCAAGGGCTCCCTTTGTTCAGAGGCTGAATGATACACAAGTTTCTCCTTATCTCAACTTGTCCTTCATTGATGCAGATCAATGGCTTCAACCCTATTCATCTATTTAA 1341 46.61 MLSQPFDFKCILFVHFFFTSTLQFSSHPYILYPKFAYIIRICTFLHSSPYTPQIMNTNLLTNIFLSSLIPLLAFLLINPTPRFLYDHAALDFTFLDDSISCHHHHHKSSTDDDEDENQSTINSICDMFPTSLLPPETNNTSVFCVDRNGCCNFTTVQAAVDAVPNMSLKRSLIWINSGIYYEKVMVARSKPNVTFQGQGYLTTAIVWNDTANSSHGTFYSGSVQVFSTNFIAKNISFMNVAPIPGPGDIGAQAVAIRIGGDQAAFWSCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNGKSFYESCQLISMANPVPQGSKFVNGAVTAHGRASADENSGFSFVNCSIGGTGRVWLGRAWRPFSSVVFANTIMTDIIAPEGWNDFNDPARDQTIFYGEYNCSGTGANMSARAPFVQRLNDTQVSPYLNLSFIDADQWLQPYSSI 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6660772 6664648 + Sed0007258.1 Sed07g0918 719782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0918 446 ProSitePatterns Pectinesterase signature 2. 291 300 IPR033131 -
Sed07g0918 446 Pfam Pectinesterase 145 436 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed07g0918 446 Gene3D - 141 445 IPR012334 -
Sed07g0918 446 FunFam Pectinesterase 137 445 - -
Sed07g0918 446 SUPERFAMILY Pectin lyase-like 142 443 IPR011050 -
Sed07g0918 446 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 114 441 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0601 Sed-Chr2:43742696 Sed07g0918 Sed-Chr7:6660772 1.00E-100 dispersed
Sed07g0918 Sed-Chr7:6660772 Sed08g0819 Sed-Chr8:6638376 8.60E-80 dispersed
Sed07g0918 Sed-Chr7:6660772 Sed12g1810 Sed-Chr12:29193164 4.80E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0918 - - - 0.0