Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0930 ATGTTCGGTTTCGTCGCCGTCGTCGTCGTCGCCGCCATCTTCTTCCATTCCCTCCTCAAACTCTCCGCCCCCGCTCGCCGAAAACTCCCCCTTCCCCCCGGCTCCATGGGCTGGCCCTACATGGGCGAAACCTTCCAACTCTACTCTCAAGACCCCAATGTCTTCTTTGCCACCAAAAAAAAGAGATATGGCCCAATTTTCAAGTCCCACATATTGGGATATCCTTGTGTGATGGTTTCCAGCCCTGCAGCTGCCAAGTTTGTGTTGGTCACTAAAGCTCATCTCTTTAAGCCTACATTTCCTGCTAGTAAAGAGAGGATGTTGGGCAAAAATGCTATCTTTTTTCACCAAGGTGATTACCATGCCAAATTGAGACGCCTCGTCCTCCGAACTTTCATGCCCGAGGCCATCAGAAACATCGTCCCCAGCATCGAGTCCATTGCTAAGAACACTGTACAGTCTTGGGATGGACAATTGATCAACACCTTCCAAGAAATGAAGATGTTCGCATTCGAGGTATCGCTGCTTTCGATATTCGGAAAAGACGAAGCTCTTTACTTCAACGACCTTAAGCGATGCTACTACATTCTCGAAAGAGGCTACAATTCGATGCCGATAAACTTGCCCGGAACACTCTTCCACAAGGCCATGAAAGCCAGGAAGGAACTAGCACATATCTTGAACAAGATCCTCACAACCAGGAGGGAAATGAAGTTCGATCACAATGACCTCCTCGGATCTTTCATGGGCGAAAAGGAAGGCCTCACCGACGAACAGATCGCCGATAACGTTATCGGTCTAATCTTCGCTGCCCGCGACACGACAGCGAGTGTTCTAACATGGATCTTGAAGTACCTAGGAGAAAGCCCAAGTGTTCTCCAAGCTGTCACTGCTGAACAAGAAGCGATAATGAAAGGAAAACAAAGTGGAGATTATAATCTCACTTGGGTTGACACCAAAAATATGCCAATCACTTCAAGGGTGATTCAAGAGACTCTAAGAGTTGCATCAGTTTTATCATTTACTTTCAGAGAAGCAGTGGAAGATGTTGAATTTGATGGATATTTGATCCCAAAAGGATGGAAGGTTTTGCCACTGTTCAGAAATATTCATCACAGCCCAGAAATCTTCCCACAGCCTGACAAGTTTGATCCTTCAAGATTTGAGGTTTCTCAAAAACCAAATACTTACATGCCATTTGGCAATGGGACCCACTCCTGCCCAGGAAATGAATTGGCCAAGCTGGAGATGCTTGTTCTACTCCATCATTTAACCACAAAGTACAGATGGAGTGTAGTTGGAGAACAAGAAGGGATTCAATATGGTCCATTTGCTCTTCCCCACAAAGGATTGCCCATTAGAATCTCTCTCAAGAAATAA 1380 45.87 MFGFVAVVVVAAIFFHSLLKLSAPARRKLPLPPGSMGWPYMGETFQLYSQDPNVFFATKKKRYGPIFKSHILGYPCVMVSSPAAAKFVLVTKAHLFKPTFPASKERMLGKNAIFFHQGDYHAKLRRLVLRTFMPEAIRNIVPSIESIAKNTVQSWDGQLINTFQEMKMFAFEVSLLSIFGKDEALYFNDLKRCYYILERGYNSMPINLPGTLFHKAMKARKELAHILNKILTTRREMKFDHNDLLGSFMGEKEGLTDEQIADNVIGLIFAARDTTASVLTWILKYLGESPSVLQAVTAEQEAIMKGKQSGDYNLTWVDTKNMPITSRVIQETLRVASVLSFTFREAVEDVEFDGYLIPKGWKVLPLFRNIHHSPEIFPQPDKFDPSRFEVSQKPNTYMPFGNGTHSCPGNELAKLEMLVLLHHLTTKYRWSVVGEQEGIQYGPFALPHKGLPIRISLKK 459
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 6788978 6792528 + Sed0024764.1 Sed07g0930 719794
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0930 459 PRINTS P450 superfamily signature 270 287 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed07g0930 459 PRINTS P450 superfamily signature 407 418 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed07g0930 459 PRINTS P450 superfamily signature 398 407 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed07g0930 459 PRINTS P450 superfamily signature 327 338 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed07g0930 459 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 400 409 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed07g0930 459 Gene3D Cytochrome P450 22 457 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed07g0930 459 PANTHER CYTOCHROME P450 26 30 428 - GO:0004497(PANTHER)|GO:0009687(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)|GO:0016709(PANTHER)
Sed07g0930 459 CDD CYP90-like 61 456 - -
Sed07g0930 459 FunFam Abscisic acid 8 22 457 - -
Sed07g0930 459 PRINTS E-class P450 group I signature 259 276 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed07g0930 459 PRINTS E-class P450 group I signature 279 305 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed07g0930 459 PRINTS E-class P450 group I signature 397 407 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed07g0930 459 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed07g0930 459 PRINTS E-class P450 group I signature 326 344 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed07g0930 459 PRINTS E-class P450 group I signature 366 390 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed07g0930 459 PRINTS E-class P450 group I signature 407 430 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed07g0930 459 Pfam Cytochrome P450 32 437 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed07g0930 459 SUPERFAMILY Cytochrome P450 26 455 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1111 Sed-Chr1:8323582 Sed07g0930 Sed-Chr7:6788978 3.40E-159 dispersed
Sed07g0930 Sed-Chr7:6788978 Sed13g1742 Sed-Chr13:22400999 1.00E-152 dispersed
Sed07g0930 Sed-Chr7:6788978 Sed07g0931 Sed-Chr7:6788978 2.10E-251 tandem
Sed13g0736 Sed-Chr13:5209111 Sed07g0930 Sed-Chr7:6788978 4.30E-244 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0930 K09843 - csv:101212508 844.728