Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed07g0931 | ATGTTCGGTTTCGTCGCCGTCGTCGTCGTCGCCGCCATCTTCTTCCATTCCCTCCTCAAACTCTCCGCCCCCGCTCGCCGAAAACTCCCCCTTCCCCCCGGCTCCATGGGCTGGCCCTACATGGGCGAAACCTTCCAACTCTACTCTCAAGACCCCAATGTCTTCTTTGCCACCAAAAAAAAGAGATATGGCCCAATTTTCAAGTCCCACATATTGGGATATCCTTGTGTGATGGTTTCCAGCCCTGCAGCTGCCAAGTTTGTGTTGGTCACTAAAGCTCATCTCTTTAAGCCTACATTTCCTGCTAGTAAAGAGAGGATGTTGGGCAAAAATGCTATCTTTTTTCACCAAGGTGATTACCATGCCAAATTGAGACGCCTCGTCCTCCGAACTTTCATGCCCGAGGCCATCAGAAACATCGTCCCCAGCATCGAGTCCATTGCTAAGAACACTGTACAGTCTTGGGATGGACAATTGATCAACACCTTCCAAGAAATGAAGATGTTCGCATTCGAGGTATCGCTGCTTTCGATATTCGGAAAAGACGAAGCTCTTTACTTCAACGACCTTAAGCGATGCTACTACATTCTCGAAAGAGGCTACAATTCGATGCCGATAAACTTGCCCGGAACACTCTTCCACAAGGCCATGAAAGCCAGGAAGGAACTAGCACATATCTTGAACAAGATCCTCACAACCAGGAGGGAAATGAAGTTCGATCACAATGACCTCCTCGGATCTTTCATGGGCGAAAAGGAAGGCCTCACCGACGAACAGATCGCCGATAACGTTATCGGTCTAATCTTCGCTGCCCGCGACACGACAGCGAGTGTTCTAACATGGATCTTGAAGTACCTAGGAGAAAGCCCAAGTGTTCTCCAAGCTGTCACTGCTGAACAAGAAGCGATAATGAAAGGAAAACAAAGTGGAGATTATAATCTCACTTGGGTTGACACCAAAAATATGCCAATCACTTCAAGGGTGATTCAAGAGACTCTAAGAGTTGCATCAGTTTTATCATTTACTTTCAGAGAAGCAGTGGAAGATGTTGAATTTGATGGATATTTGATCCCAAAAGGATGGAAGGTTTTGCCACTGTTCAGAAATATTCATCACAGCCCAGAAATCTTCCCACAGCCTGACAAGTTTGATCCTTCAAGATTTGAGGTTTCTCAAAAACCAAATACTTACATGCCATTTGGCAATGGGACCCACTCCTGCCCAGGAAATGAATTGGCCAAGCTGGAGATGCTTGTTCTACTCCATCATTTAACCACAAAGTACAGGTTGGTAAATTTTCAAAAACAATTTCCATAA | 1317 | 45.71 | MFGFVAVVVVAAIFFHSLLKLSAPARRKLPLPPGSMGWPYMGETFQLYSQDPNVFFATKKKRYGPIFKSHILGYPCVMVSSPAAAKFVLVTKAHLFKPTFPASKERMLGKNAIFFHQGDYHAKLRRLVLRTFMPEAIRNIVPSIESIAKNTVQSWDGQLINTFQEMKMFAFEVSLLSIFGKDEALYFNDLKRCYYILERGYNSMPINLPGTLFHKAMKARKELAHILNKILTTRREMKFDHNDLLGSFMGEKEGLTDEQIADNVIGLIFAARDTTASVLTWILKYLGESPSVLQAVTAEQEAIMKGKQSGDYNLTWVDTKNMPITSRVIQETLRVASVLSFTFREAVEDVEFDGYLIPKGWKVLPLFRNIHHSPEIFPQPDKFDPSRFEVSQKPNTYMPFGNGTHSCPGNELAKLEMLVLLHHLTTKYRLVNFQKQFP | 438 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 6788978 | 6792528 | + | Sed0024764.2 | Sed07g0931 | 719795 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed07g0931 | 438 | Gene3D | Cytochrome P450 | 22 | 436 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed07g0931 | 438 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 400 | 409 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed07g0931 | 438 | Pfam | Cytochrome P450 | 32 | 430 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed07g0931 | 438 | PANTHER | CYTOCHROME P450 26 | 30 | 428 | - | GO:0004497(PANTHER)|GO:0009687(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)|GO:0016709(PANTHER) | |
| Sed07g0931 | 438 | SUPERFAMILY | Cytochrome P450 | 26 | 431 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed07g0931 | 438 | FunFam | Abscisic acid 8 | 22 | 437 | - | - | |
| Sed07g0931 | 438 | PRINTS | P450 superfamily signature | 407 | 418 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed07g0931 | 438 | PRINTS | P450 superfamily signature | 398 | 407 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed07g0931 | 438 | PRINTS | P450 superfamily signature | 327 | 338 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed07g0931 | 438 | PRINTS | P450 superfamily signature | 270 | 287 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed07g0931 | 438 | CDD | CYP90-like | 61 | 429 | - | - | |
| Sed07g0931 | 438 | PRINTS | E-class P450 group I signature | 60 | 79 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed07g0931 | 438 | PRINTS | E-class P450 group I signature | 326 | 344 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed07g0931 | 438 | PRINTS | E-class P450 group I signature | 279 | 305 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed07g0931 | 438 | PRINTS | E-class P450 group I signature | 407 | 430 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed07g0931 | 438 | PRINTS | E-class P450 group I signature | 259 | 276 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed07g0931 | 438 | PRINTS | E-class P450 group I signature | 397 | 407 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed07g0931 | 438 | PRINTS | E-class P450 group I signature | 366 | 390 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed07g0931 | Sed-Chr7:6788978 | Sed13g0736 | Sed-Chr13:5209111 | 1.10E-228 | dispersed | |
| Sed07g0930 | Sed-Chr7:6788978 | Sed07g0931 | Sed-Chr7:6788978 | 2.10E-251 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed07g0931 | K09843 | - | csv:101212508 | 790.03 |