Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g0934 | ATGGGTTCCAGTGGGAGTAAATCGTCGACCAGTTCTCTGCCGCCCCCGTCGGCTCTGTCGTGTTCGGGGAGAATCCGGCGGGGGAGATCCAAAGGCCGGCGAGTTTTCCGGTCTGCTTGCCTTGGTACGCCCTCTGGATCGCACCACAGTGACAATGAAGATAATGATTGTGAAAGTGAGAACAAAAAGAATGCTCATGATTATTCTTCTGCGAATCAGACTGCTCGAGCATTAGATCCGATGAAAATCGAGGGATACAGAAGGGCCAAAGCCGAGGAATCTGTTGAAACGCCTTGCATATTGTCGAATGTTGAGCTTGATGAATGGGATCGAGCAGGTGTTGCTGTTACATCTCCCAGAGCTGGAAGTACCTCTACTCGTGCATCCTCTCTTCAATCGTTGAACCCTTCGAGTAACTTCCTTTCTCGATTTAGTTTCATTCCCGGTAATGTAAGCTTCCGGCTTAGTAGAGCAAGTAGTTTAGGATCATCTAGATCTTTTCCTGTGACTTCATCAAATCTCTCAACGTTGAATGATGAAGACGAGCTTCGTTTATCGAACAGACCTTCCAGAGGCCTGGTCGATCAAGATGAAATGCAGCAACATAGGGACTCGCTTCCTGAGGCATTAGCTAGTGCAACACATACTCAGTGTCATGAAGATGGTCCTGCTAATTTTAGGTTGAATGCACAACCATGTGGTCTTTCTGATAACTTACAAGACGATCAGACAGTTTTTTCTGGCCATGACTTGGCTGGTGATTGTGATGATGCAAGAATAGACCCGGATGGAAACCTTTCCCATCCTCAAACTCTGCCCGAAAATGAAAGGAGTGAGGTTAGACAATCTGATAGACGGATTGGATCTAGGGAACCAGTTGAACGCAATTTTCGTTTCAGTCGGACCCTCAGTGTTGGAAGACTCCGTGATAGAGTTCTTCGTAGATCATCGTTATCCGACTTCACATTTTGTCCTCAGCAACAAGAGGGAGAGGAGAGAGATGCTAATCAGAGTGGCGATGACCGACATGTCACTACTGAGACAAGGGCTTTGTCATCTGAAGATAATGCTATGACCTCTCCAACAATGTCAGGTTATCCAGCTTCTATTCTATCTAGTTCTTTGTTCAGCACCCAAGATCATGATATGGAAACTACCCGTCCTCGAGAAGGTAGATATCATGATTTGCTGGAACACCGGTCGAATTTCCTTGAACGGAGAAGAAGAATACGTACCCAGGTTCGGGCCCTACAGCGGTTGGGAAGTCGCTTTGAGAACCTGTCTGGGCACGAAAGATCATGTATATTATCCGGTCAACATAGAACCGGTCATTGTACTTGTCGTAGCAATAATCATGAAACAAATGTAAACGATAACACCAATGCTAGAGCTAGTATATCAAGAATTGTAATGTTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTCTTATCCTCCCGTCCTGCATCTTCGATTGGCTCTCTGCCTGCACCGAACGATGTTGTAGATTCTTTGCCTGTTAAATTTTACACCAAGTTACAAAAGCATCAAACCGAGGAAGCTGCCCAATGCTACATATGCCTGGTCGAGTACGATGAAGGAGATAACATGAGAGTCTTGCCTTGCCATCACGAGTTTCATGCAGCGTGTGTCGACAAGTGGCTGAAGGAAATCCACAGGGTATGCCCACTTTGTCGAGGCGACATATGCAGCAGATCTGATGCGCTATCAGACGATGTCAAGTAA | 1764 | 45.98 | MGSSGSKSSTSSLPPPSALSCSGRIRRGRSKGRRVFRSACLGTPSGSHHSDNEDNDCESENKKNAHDYSSANQTARALDPMKIEGYRRAKAEESVETPCILSNVELDEWDRAGVAVTSPRAGSTSTRASSLQSLNPSSNFLSRFSFIPGNVSFRLSRASSLGSSRSFPVTSSNLSTLNDEDELRLSNRPSRGLVDQDEMQQHRDSLPEALASATHTQCHEDGPANFRLNAQPCGLSDNLQDDQTVFSGHDLAGDCDDARIDPDGNLSHPQTLPENERSEVRQSDRRIGSREPVERNFRFSRTLSVGRLRDRVLRRSSLSDFTFCPQQQEGEERDANQSGDDRHVTTETRALSSEDNAMTSPTMSGYPASILSSSLFSTQDHDMETTRPREGRYHDLLEHRSNFLERRRRIRTQVRALQRLGSRFENLSGHERSCILSGQHRTGHCTCRSNNHETNVNDNTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPASSIGSLPAPNDVVDSLPVKFYTKLQKHQTEEAAQCYICLVEYDEGDNMRVLPCHHEFHAACVDKWLKEIHRVCPLCRGDICSRSDALSDDVK | 587 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 6820745 | 6824386 | - | Sed0011927.1 | Sed07g0934 | 719798 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g0934 | 587 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 581 | - | - | |
Sed07g0934 | 587 | SUPERFAMILY | RING/U-box | 511 | 578 | - | - | |
Sed07g0934 | 587 | MobiDBLite | consensus disorder prediction | 333 | 349 | - | - | |
Sed07g0934 | 587 | MobiDBLite | consensus disorder prediction | 161 | 200 | - | - | |
Sed07g0934 | 587 | ProSiteProfiles | Zinc finger RING-type profile. | 530 | 572 | IPR001841 | - | |
Sed07g0934 | 587 | MobiDBLite | consensus disorder prediction | 161 | 180 | - | - | |
Sed07g0934 | 587 | MobiDBLite | consensus disorder prediction | 1 | 76 | - | - | |
Sed07g0934 | 587 | MobiDBLite | consensus disorder prediction | 274 | 291 | - | - | |
Sed07g0934 | 587 | MobiDBLite | consensus disorder prediction | 49 | 65 | - | - | |
Sed07g0934 | 587 | MobiDBLite | consensus disorder prediction | 244 | 291 | - | - | |
Sed07g0934 | 587 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 21 | - | - | |
Sed07g0934 | 587 | Pfam | Ring finger domain | 529 | 572 | IPR001841 | - | |
Sed07g0934 | 587 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Sed07g0934 | 587 | FunFam | Putative RING zinc finger domain superfamily protein | 498 | 577 | - | - | |
Sed07g0934 | 587 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 492 | 577 | IPR013083 | - | |
Sed07g0934 | 587 | MobiDBLite | consensus disorder prediction | 323 | 362 | - | - | |
Sed07g0934 | 587 | SMART | ring_2 | 530 | 571 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g1400 | Sed-Chr6:38511540 | Sed07g0934 | Sed-Chr7:6820745 | 5.00E-09 | dispersed | |
Sed07g0934 | Sed-Chr7:6820745 | Sed08g0619 | Sed-Chr8:4289099 | 3.90E-40 | dispersed | |
Sed07g0934 | Sed-Chr7:6820745 | Sed07g0935 | Sed-Chr7:6820745 | 0.00E+00 | tandem | |
Sed13g0745 | Sed-Chr13:5290608 | Sed07g0934 | Sed-Chr7:6820745 | 2.10E-267 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g0934 | - | - | - | 0.0 |