Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0934 ATGGGTTCCAGTGGGAGTAAATCGTCGACCAGTTCTCTGCCGCCCCCGTCGGCTCTGTCGTGTTCGGGGAGAATCCGGCGGGGGAGATCCAAAGGCCGGCGAGTTTTCCGGTCTGCTTGCCTTGGTACGCCCTCTGGATCGCACCACAGTGACAATGAAGATAATGATTGTGAAAGTGAGAACAAAAAGAATGCTCATGATTATTCTTCTGCGAATCAGACTGCTCGAGCATTAGATCCGATGAAAATCGAGGGATACAGAAGGGCCAAAGCCGAGGAATCTGTTGAAACGCCTTGCATATTGTCGAATGTTGAGCTTGATGAATGGGATCGAGCAGGTGTTGCTGTTACATCTCCCAGAGCTGGAAGTACCTCTACTCGTGCATCCTCTCTTCAATCGTTGAACCCTTCGAGTAACTTCCTTTCTCGATTTAGTTTCATTCCCGGTAATGTAAGCTTCCGGCTTAGTAGAGCAAGTAGTTTAGGATCATCTAGATCTTTTCCTGTGACTTCATCAAATCTCTCAACGTTGAATGATGAAGACGAGCTTCGTTTATCGAACAGACCTTCCAGAGGCCTGGTCGATCAAGATGAAATGCAGCAACATAGGGACTCGCTTCCTGAGGCATTAGCTAGTGCAACACATACTCAGTGTCATGAAGATGGTCCTGCTAATTTTAGGTTGAATGCACAACCATGTGGTCTTTCTGATAACTTACAAGACGATCAGACAGTTTTTTCTGGCCATGACTTGGCTGGTGATTGTGATGATGCAAGAATAGACCCGGATGGAAACCTTTCCCATCCTCAAACTCTGCCCGAAAATGAAAGGAGTGAGGTTAGACAATCTGATAGACGGATTGGATCTAGGGAACCAGTTGAACGCAATTTTCGTTTCAGTCGGACCCTCAGTGTTGGAAGACTCCGTGATAGAGTTCTTCGTAGATCATCGTTATCCGACTTCACATTTTGTCCTCAGCAACAAGAGGGAGAGGAGAGAGATGCTAATCAGAGTGGCGATGACCGACATGTCACTACTGAGACAAGGGCTTTGTCATCTGAAGATAATGCTATGACCTCTCCAACAATGTCAGGTTATCCAGCTTCTATTCTATCTAGTTCTTTGTTCAGCACCCAAGATCATGATATGGAAACTACCCGTCCTCGAGAAGGTAGATATCATGATTTGCTGGAACACCGGTCGAATTTCCTTGAACGGAGAAGAAGAATACGTACCCAGGTTCGGGCCCTACAGCGGTTGGGAAGTCGCTTTGAGAACCTGTCTGGGCACGAAAGATCATGTATATTATCCGGTCAACATAGAACCGGTCATTGTACTTGTCGTAGCAATAATCATGAAACAAATGTAAACGATAACACCAATGCTAGAGCTAGTATATCAAGAATTGTAATGTTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTCTTATCCTCCCGTCCTGCATCTTCGATTGGCTCTCTGCCTGCACCGAACGATGTTGTAGATTCTTTGCCTGTTAAATTTTACACCAAGTTACAAAAGCATCAAACCGAGGAAGCTGCCCAATGCTACATATGCCTGGTCGAGTACGATGAAGGAGATAACATGAGAGTCTTGCCTTGCCATCACGAGTTTCATGCAGCGTGTGTCGACAAGTGGCTGAAGGAAATCCACAGGGTATGCCCACTTTGTCGAGGCGACATATGCAGCAGATCTGATGCGCTATCAGACGATGTCAAGTAA 1764 45.98 MGSSGSKSSTSSLPPPSALSCSGRIRRGRSKGRRVFRSACLGTPSGSHHSDNEDNDCESENKKNAHDYSSANQTARALDPMKIEGYRRAKAEESVETPCILSNVELDEWDRAGVAVTSPRAGSTSTRASSLQSLNPSSNFLSRFSFIPGNVSFRLSRASSLGSSRSFPVTSSNLSTLNDEDELRLSNRPSRGLVDQDEMQQHRDSLPEALASATHTQCHEDGPANFRLNAQPCGLSDNLQDDQTVFSGHDLAGDCDDARIDPDGNLSHPQTLPENERSEVRQSDRRIGSREPVERNFRFSRTLSVGRLRDRVLRRSSLSDFTFCPQQQEGEERDANQSGDDRHVTTETRALSSEDNAMTSPTMSGYPASILSSSLFSTQDHDMETTRPREGRYHDLLEHRSNFLERRRRIRTQVRALQRLGSRFENLSGHERSCILSGQHRTGHCTCRSNNHETNVNDNTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPASSIGSLPAPNDVVDSLPVKFYTKLQKHQTEEAAQCYICLVEYDEGDNMRVLPCHHEFHAACVDKWLKEIHRVCPLCRGDICSRSDALSDDVK 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6820745 6824386 - Sed0011927.1 Sed07g0934 719798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0934 587 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 581 - -
Sed07g0934 587 SUPERFAMILY RING/U-box 511 578 - -
Sed07g0934 587 MobiDBLite consensus disorder prediction 333 349 - -
Sed07g0934 587 MobiDBLite consensus disorder prediction 161 200 - -
Sed07g0934 587 ProSiteProfiles Zinc finger RING-type profile. 530 572 IPR001841 -
Sed07g0934 587 MobiDBLite consensus disorder prediction 161 180 - -
Sed07g0934 587 MobiDBLite consensus disorder prediction 1 76 - -
Sed07g0934 587 MobiDBLite consensus disorder prediction 274 291 - -
Sed07g0934 587 MobiDBLite consensus disorder prediction 49 65 - -
Sed07g0934 587 MobiDBLite consensus disorder prediction 244 291 - -
Sed07g0934 587 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Sed07g0934 587 Pfam Ring finger domain 529 572 IPR001841 -
Sed07g0934 587 MobiDBLite consensus disorder prediction 1 18 - -
Sed07g0934 587 FunFam Putative RING zinc finger domain superfamily protein 498 577 - -
Sed07g0934 587 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 492 577 IPR013083 -
Sed07g0934 587 MobiDBLite consensus disorder prediction 323 362 - -
Sed07g0934 587 SMART ring_2 530 571 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1400 Sed-Chr6:38511540 Sed07g0934 Sed-Chr7:6820745 5.00E-09 dispersed
Sed07g0934 Sed-Chr7:6820745 Sed08g0619 Sed-Chr8:4289099 3.90E-40 dispersed
Sed07g0934 Sed-Chr7:6820745 Sed07g0935 Sed-Chr7:6820745 0.00E+00 tandem
Sed13g0745 Sed-Chr13:5290608 Sed07g0934 Sed-Chr7:6820745 2.10E-267 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0934 - - - 0.0