Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0944 ATGGCCTCCATTTCAATCTTCTTATCTTTGCTCCTCTTCTCCTCCTCCCAAGCAACCACGAATCACGGCTGCGGTGGCGATGGCGGCAATAATGGCTTCACCACCTCTCTCAGCCACCGTGATTCCCTTCTCTATAACCCATCTCTCTCTCTCTCTCGCTACGACCGCCTCGCCAGGGCCTTTGGACGCTCCTTCTCCCGCTCCTCTTGCCAGTCCCTCGAAAGCTCTGGCTGCGAAGCTGCAGCTACGGTTACGGTTACGGAGACCAATCCTTCACATCAAACCTACAATAAGGGGGAGTTGGGATTTGATAAGATCACTCTCGGATCATCGTCCGTGAATACAGTCATTGGTTGCGGACATGAGAGCGGCGGCGGGTTCGGTGTTTCCTCTGGCGTTATCGAACTCGGCGGTGGAAAACTCTCTTTAATCTCTCAAATGAACCAAAACAATGTCGTCAACCGACGGTTCTCCTATTGCTTTCCGACCGTACTCAGTCGAGGAAAAGGAAAAATAAACTTCGGTAAGAACGCCGTCGTTTCTGGCCCTGGAGTCGTTTCAACTCCAATGATCTCGAAAAAATCCAACTTGTTGTATTACATGATGACTCTTAAAGTTGTTTCCGTTGGTAATGAACGTCAAGCGGTCGACATGTCGACTGCACAAGGAAACATGATTATAGACACCGGGACGACATTGACGTATCTTCCGAAGGAAGTCTACGACGGTGTCGTTTCATCATTGGTGAACGTTGTTCGAGCGGAGAGGGTGGAGGATCCCGGTAGATTTTTCAGACTTTGCTACAACAGCGTTGGATTGGATGTTCCGATAATCACCGGGCACTTCGATGGCGGCGCCGATGTGCATTTGCTGCCAGTGAATACGTTTTTGAAGGTGGCGGATAATGTGAGTTGCTTGACATTGATACCGTCATCACAGTCGGATCCTTTTGGGATTTGGGGAAATTTGGCTCAAACCAATTTCTTGATCGGATATGATTTGAAGCTGAGAAAATTGTCATTCAAACCAACTGTTTGTGCTTAG 1044 48.75 MASISIFLSLLLFSSSQATTNHGCGGDGGNNGFTTSLSHRDSLLYNPSLSLSRYDRLARAFGRSFSRSSCQSLESSGCEAAATVTVTETNPSHQTYNKGELGFDKITLGSSSVNTVIGCGHESGGGFGVSSGVIELGGGKLSLISQMNQNNVVNRRFSYCFPTVLSRGKGKINFGKNAVVSGPGVVSTPMISKKSNLLYYMMTLKVVSVGNERQAVDMSTAQGNMIIDTGTTLTYLPKEVYDGVVSSLVNVVRAERVEDPGRFFRLCYNSVGLDVPIITGHFDGGADVHLLPVNTFLKVADNVSCLTLIPSSQSDPFGIWGNLAQTNFLIGYDLKLRKLSFKPTVCA 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6913276 6914758 + Sed0024105.1 Sed07g0944 719808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0944 347 CDD pepsin_A_like_plant 94 346 IPR034161 -
Sed07g0944 347 ProSiteProfiles Peptidase family A1 domain profile. 1 342 IPR033121 -
Sed07g0944 347 Pfam Xylanase inhibitor N-terminal 67 176 IPR032861 -
Sed07g0944 347 FunFam Aspartic proteinase CDR1 177 347 - -
Sed07g0944 347 SUPERFAMILY Acid proteases 62 346 IPR021109 -
Sed07g0944 347 Pfam Xylanase inhibitor C-terminal 200 342 IPR032799 -
Sed07g0944 347 Gene3D Acid Proteases 38 175 IPR021109 -
Sed07g0944 347 Gene3D Acid Proteases 180 347 IPR021109 -
Sed07g0944 347 PANTHER OS07G0603500 PROTEIN-RELATED 68 343 IPR051708 GO:0005576(PANTHER)
Sed07g0944 347 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 225 236 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0944 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0944 Sed-Chr7:6913276 Sed13g0757 Sed-Chr13:5402586 1.20E-102 dispersed
Sed07g0944 Sed-Chr7:6913276 Sed07g0945 Sed-Chr7:6918419 4.30E-79 tandem
Sed13g0756 Sed-Chr13:5399088 Sed07g0944 Sed-Chr7:6913276 9.70E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g406 . . . Bda08g00367 . . . . Cmo08g01153 Cmo17g00269 . . . . . . . . . . . . . . Cla06g00532 Cam06g0574 Cec06g0571 Cco06g0579 Clacu06g0561 Cmu06g0555 Cre06g1323 Cone14ag0806 Cone15ag0809 . . . . Chy11g01443 . . . . . . . . . Sed07g0944 . . Cma08g01182 Cma17g00282 Car08g01058 Car17g00257 Cpe12g00235 Cpe17g00114 Bhi12g01781 Tan06g2090 . . . . . . . . . . . . Lsi09g01372 . . Cme11g01948
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001637 0 2 1 0 0 2 0 3 2 3 1 2 4 3 2 6 2 1 5 3 3 1 3 5 6 2 2 4 3 0 71