Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0948 ATGGGCATCTGCCTGGTCAAGTTTTCTGGCTTGTTGCTTCTTCACGCTCTACTTCTTTCTATGGCAATGAATAAAAGCAATGGCCTCACCTCCGATGGTGAGGCACTTCTAAGCTTTAGGATGGCAGTTTCCAGTTCTTATGGTGTCATTATTCAGTGGAGACCAGAGGATCCAAACCCTTGTAACTGGACAGGAGTAGTCTGCAATTCAAAAACGAAGCGAGTAATCTCATTGAAGCTTGGAAATCACAAACTGAGTGGGGTCATTGCACCTGAACTTGGGAAGCTAGACCAATTGAAGACCCTAAATCTTTCGGACAACAACCTATATGGTACAATACCATCAGAACTCGGAAATTGCTCACAGTTGCAGGGAATGTTCTTGCAAAGAAACTACCTAAGTGGAGTGATTCCCTATGAGCTGGGAAACCTTTCTGAGTTGGAAATGTTAGACGTTTCTAGCAACTCACTTAGTGGAAATATCCCAACGTCCCTTGGGAGTTTGGATAAGCTTGCTATTCTCAATGTGTCAGCAAATTTTTTAACTGGACCAGTACCTTCTGATGGTGTTCTTTCCAAGTTTTCAGACACTTCTTTTGTTGGAAATCGTGGTTTATGTGGGAAACAAGTCAGTGTCACTTGCAAAGACAATAACAAGGGATCTGGAACAAATTCTGAGTCCCCAGGCTTAGGCCAGAATCAAATGAGGAAGAAGTACTCTGGTCGACTGCTCATAAGTGCCTTGGCTACAGTGGGGGCACTACTACTTGTTGCTCTTATGTGTTTCTGGGGTTGCTTTCTTTATAAAAGGTTTGGCAAAAATGAAAAGAAAGGTCTTGCAAAGAATGTTGGTGGAGGTGCATCAGTTGTGATGTTTCATGGAGACTTGCCATACTCTTCAAAAGATATCATGAAGAAGTTGGAAACCTTGAATGAGGAGCACATAATTGGTTCTGGGGGCTTCGGAACAGTTTACAAGCTTGCAATGGATGACGGCAATGTCTTTGCTTTGAAAAATATTGTAAAGATAAATGAGGGGTTTGATCACTTTTTTGAGAGGGAACTTGAAATTCTTGGAAGTTTAAAGCACAGGTACCTTGTTAATTTGAGAGGATATTGCAACTCACCCACATCAAAACTGTTGATTTATGATTACCTATCCGGGGGCAGCCTTGATGAGGCCCTTCATGAAAGATCTGAGCAATTGGATTGGGACACACGCTTGAATATTATATTTGGAGCAGCTAAAGGCCTTGCCTATCTGCATCATGATTGTTCACCCAGAATCATACATCGAGATATCAAGTCAAGCAACATTTTACTTGATGGAAATCTGGATGCTCGAGTTTCTGACTTTGGACTTGCCAAGCTTCTGGATGATGATAAATCTCACATTACGACCATTGTTGCTGGAACATTTGGTTATTTGGCCCCTGAATATATGCAAAGTGGTAGGGCAACTGAAAAGACGGATGTATATAGTTTTGGGGTTCTGGTACTTGAAGTACTGAGTGGAAAACGACCTACAGATGCATCATTTATTGAGAAAGGCCTGAACATTGTTGGCTGGCTAAATTTTCTTATCACGGAGAATAGGCAACGAGAAATAGTTGATTCACAATGTGAAGGAGTGCAGACAGAAACTCTCGATTCATTGCTCAGTCTTGCTATTCAGTGTGTTTCTTCTAGTCCAGACGATCGGCCGACCATGCACCGAGTAGTCCAGTTCTTTGAATCCGAGGTTATGACGCCATGCCCAAGTGATTTCGATGATTCCAATTCTGACTAG 1788 42.17 MGICLVKFSGLLLLHALLLSMAMNKSNGLTSDGEALLSFRMAVSSSYGVIIQWRPEDPNPCNWTGVVCNSKTKRVISLKLGNHKLSGVIAPELGKLDQLKTLNLSDNNLYGTIPSELGNCSQLQGMFLQRNYLSGVIPYELGNLSELEMLDVSSNSLSGNIPTSLGSLDKLAILNVSANFLTGPVPSDGVLSKFSDTSFVGNRGLCGKQVSVTCKDNNKGSGTNSESPGLGQNQMRKKYSGRLLISALATVGALLLVALMCFWGCFLYKRFGKNEKKGLAKNVGGGASVVMFHGDLPYSSKDIMKKLETLNEEHIIGSGGFGTVYKLAMDDGNVFALKNIVKINEGFDHFFERELEILGSLKHRYLVNLRGYCNSPTSKLLIYDYLSGGSLDEALHERSEQLDWDTRLNIIFGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLDARVSDFGLAKLLDDDKSHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLITENRQREIVDSQCEGVQTETLDSLLSLAIQCVSSSPDDRPTMHRVVQFFESEVMTPCPSDFDDSNSD 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6925062 6934354 + Sed0013866.3 Sed07g0948 719812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0948 595 Gene3D Transferase(Phosphotransferase) domain 1 386 584 - -
Sed07g0948 595 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Sed07g0948 595 Gene3D Ribonuclease Inhibitor 29 216 IPR032675 -
Sed07g0948 595 SUPERFAMILY L domain-like 30 191 - -
Sed07g0948 595 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524(InterPro)
Sed07g0948 595 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 284 385 - -
Sed07g0948 595 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 191 - -
Sed07g0948 595 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 386 588 - -
Sed07g0948 595 Pfam Protein kinase domain 312 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0948 595 SMART serkin_6 310 577 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0948 595 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 164 579 IPR050647 -
Sed07g0948 595 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515(InterPro)
Sed07g0948 595 Gene3D Phosphorylase Kinase; domain 1 281 385 - -
Sed07g0948 595 ProSiteProfiles Protein kinase domain profile. 310 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0948 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g0948 595 SUPERFAMILY Protein kinase-like (PK-like) 292 577 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0946 Sed-Chr7:6925062 Sed07g0948 Sed-Chr7:6925062 3.10E-287 dispersed
Sed07g0948 Sed-Chr7:6925062 Sed08g2570 Sed-Chr8:38220240 9.50E-127 dispersed
Sed07g0947 Sed-Chr7:6925062 Sed07g0948 Sed-Chr7:6925062 3.10E-287 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79442 PF00069 Pkinase 1.70E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0948 - - - 0.0