Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0955 ATGCCATCCGAGAATCCGGATGGTTATTGCTTAATCAAAGAAAAGATGGCACAAGCTCTTCGGTACATTAAAGAATCGTCGGACCAGCATGTACTAGCTCAAGTTTGGGCACCTGTAAAGAGTGGTGGCAAGCTTGTTCTTTCAACTTCTGGCCAACCATTTGTTCTTGATACACAGAGCAATGGACTTCATCAATATAGGATGGCCTCTTTGATGTATATGTTCTCTTTGGAGACGGATTCGGATGGATGTCTCGGCCTCCCTGGACGGGTTTTCCAACAGAAATTGCCTGAATGGACTCCAAATGTGCAGTTTTACTCGAACAAGGAGTATCCACGACTTAGTCACGCTCTTAACTATAATGTTCAGGGAACTTTGGCCTTGCCTGTTTTCGACTCTTCTGGGCAGTCTTGTCTTGGTGTTCTTGAGATAATCATGACCTCACAGAAGATCAATTATGCACCTGAGGTGGATAAAGTCTGCAAAGCTCTTCAGGCTGTCAATCTAAAAAGTTCAGAGATTTTGGATCATCCGACTATTCAGATTTGCAATGAAGGTCGACAGAATGCACTGGCTGAAATTTTGGAGGTACTCACAGTTGTATGCGAGACTCATAGCTTACCATTGGCTCAAACCTGGGTTCCGTGCAGGCACCGAAACGTGCTCGCTAACGGTGGAGGTTTGAAGAAAAGCTGTACTAGCTTTGATGGTAGTTGCATGGGACGGATCTGTATGTCTGCAACTGAAGTAGCGTCCTATGTTATTGATGCGCACATGTGGGGGTTTCGTGAGGCATGTTTAGAACACCACTTACAAAAGGGTCAAGGGGTTTCTGGGAGGGCTTTTTCATCCCACAGCTCATGTTTTTGTGGAGACATCACCCAATTCTGCAAGTCTGAATACCCTTTGGTACACTATGCACTCATGTTTGGATTAAAGAGCTGTTTTTCAATCTGCTTGCGGAGCACGTTTACTGGAGATGATGAGTACGTTCTGGAGTTCTTTCTGCCTCCAAGCATTGATGATCATCAAAAACAAAAGACTTTATTGGGGGCATTAATGGCAACAATGAAGCAGCATTTCTACTCTCTCAAAGTTGCTTCTGGAATCAAACTTGAGGAGGAAGGACTTGTCGAGTTTGTTCAAGCATCGAGAAACGGAGAGTTCGAGTCGAGACTTGAGTACATTCGAATTCCTCGACCAATGGAATTGCCACCTAAGTCTGATGCCATGCCAAATGGTGGAGGGGTAGTTGCATTAGAGACAATGCAACAACAATCTTTAATGGTTCGTGATGCCCCAAAGGATGAAAAAATTACCGCTCAGGATGGGGAAAACCACAGCCCCGCTCCTTGTCCACAGAATAAGGAAGCCAAAAAGCCGTCTGAAAGAAAGCGTGGAAAAGCCGAGAAATCAATTAGTCTGGAGGTTCTACAACAATACTTTGCTGGCAGCCTTAAGGATGCTGCTAAAAGCCTTGGCGTTTGTCCCACAACAATGAAGCGTATCTGTAGGCAGCATGGGATCTCACGGTGGCCATCTCGTAAGATAAACAAGGTGAACCGCTCTCTTTCAAAGCTAAAGCGTGTGATTGAATCTGTTCAAGGGGCCGAAGGCGCATTCGGAATATCTTCTCTGGCTACAAGTCCACTTCCTGTTGCTGTTAGTCCGAATTCTCAACCTTTAACTCTGGATGGGTCTAATCAGCAAAACTGTGCATCTTCTCAACCCTCTGATCCTCAACAGATAGAAACAAACACCTCAGAAGCACAGACAAATAACACACAAGCTAGACTGGAAGATCAATTACATAGGGGAGTGTGGAGTCCAGAAGATTCGAATCACGAGCTAAACGGATATCTACCGAAGCTTGCAAATGGTTTGAACAATTTTAAAACAGGGAGTGGATCACAGGAAGAGAGCACGGGAACACCTACTTCTCACGGTTCATGTCAAGGTAGTCCTGCAAACGACAGTGCAGCAGCAAATAATCCCATTGCTATTCCCCACCAAGAACAATGTGTAAGAAGAGAATCGCCTGAAGCAACATTCCATCTGATTGATAAACTGAATATATCGGTGCCCGCTTGTCCAATCCCAGATACGCTCGTGGAGGAACCATTTGGAGGAATGCTGATTGAGGATGCAGGAAGTTCTAAGGACTTAACAAACCTTTGCGCATCTGGCGTTGATGCTATTCTCGACGAGCAAGTGCCCGGATTTTGTTGGGCCAACCCGCCTGATATGGCTCTGAGACAACCTATGGACTCTGTCTGTTACACAGTCCCTCACGTATCCGCAAGGCAAGAACCAAGGAGAATGACTATCAAGGCCACTTACAAGGAAGATATCATTCGGTTTCGGATTTCCTTGAGTTCTAGTATTGTGGAGTTAAGAGAGGAAGTGGCGAAGAGATTGAAACTGGAGGTTGGTACTTTCGATATCAAATACATGGACGACGATCGAGAATGGGTTCTTATTGCCTGCGATGCAGACCTACAAGAGTGTGCAGATATCTCAAGATCATCTGGTAGCAACATAATAAGATTGAATGTTCATGATTTGTCTGTGAATCTTGGGAGTTCTTGTGAAAGTACTGGGGAGTGA 2607 45.03 MPSENPDGYCLIKEKMAQALRYIKESSDQHVLAQVWAPVKSGGKLVLSTSGQPFVLDTQSNGLHQYRMASLMYMFSLETDSDGCLGLPGRVFQQKLPEWTPNVQFYSNKEYPRLSHALNYNVQGTLALPVFDSSGQSCLGVLEIIMTSQKINYAPEVDKVCKALQAVNLKSSEILDHPTIQICNEGRQNALAEILEVLTVVCETHSLPLAQTWVPCRHRNVLANGGGLKKSCTSFDGSCMGRICMSATEVASYVIDAHMWGFREACLEHHLQKGQGVSGRAFSSHSSCFCGDITQFCKSEYPLVHYALMFGLKSCFSICLRSTFTGDDEYVLEFFLPPSIDDHQKQKTLLGALMATMKQHFYSLKVASGIKLEEEGLVEFVQASRNGEFESRLEYIRIPRPMELPPKSDAMPNGGGVVALETMQQQSLMVRDAPKDEKITAQDGENHSPAPCPQNKEAKKPSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGISSLATSPLPVAVSPNSQPLTLDGSNQQNCASSQPSDPQQIETNTSEAQTNNTQARLEDQLHRGVWSPEDSNHELNGYLPKLANGLNNFKTGSGSQEESTGTPTSHGSCQGSPANDSAAANNPIAIPHQEQCVRRESPEATFHLIDKLNISVPACPIPDTLVEEPFGGMLIEDAGSSKDLTNLCASGVDAILDEQVPGFCWANPPDMALRQPMDSVCYTVPHVSARQEPRRMTIKATYKEDIIRFRISLSSSIVELREEVAKRLKLEVGTFDIKYMDDDREWVLIACDADLQECADISRSSGSNIIRLNVHDLSVNLGSSCESTGE 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6956869 6961010 - Sed0024207.3 Sed07g0955 719819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0955 868 ProSiteProfiles RWP-RK domain profile. 459 540 IPR003035 -
Sed07g0955 868 SUPERFAMILY CAD & PB1 domains 766 856 - -
Sed07g0955 868 SMART PB1_new 773 855 IPR000270 GO:0005515(InterPro)
Sed07g0955 868 CDD PB1_NLP 774 854 IPR034891 -
Sed07g0955 868 MobiDBLite consensus disorder prediction 557 597 - -
Sed07g0955 868 Pfam NLP protein GAF domain 181 364 IPR055081 -
Sed07g0955 868 Pfam NLP protein GAF domain 30 166 IPR055081 -
Sed07g0955 868 PANTHER PROTEIN NLP8 4 867 IPR045012 GO:0003700(InterPro)
Sed07g0955 868 MobiDBLite consensus disorder prediction 629 663 - -
Sed07g0955 868 MobiDBLite consensus disorder prediction 439 470 - -
Sed07g0955 868 ProSiteProfiles PB1 domain profile. 773 855 IPR053793 -
Sed07g0955 868 Pfam RWP-RK domain 472 519 IPR003035 -
Sed07g0955 868 Gene3D - 771 854 - -
Sed07g0955 868 Pfam PB1 domain 774 854 IPR000270 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0955 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0953 Sed-Chr7:6956869 Sed07g0955 Sed-Chr7:6956869 0.00E+00 dispersed
Sed07g0955 Sed-Chr7:6956869 Sed13g0765 Sed-Chr13:5495140 0.00E+00 dispersed
Sed07g0954 Sed-Chr7:6956869 Sed07g0955 Sed-Chr7:6956869 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g0953 . 180 981 NLP Transcription Factor Family AT1G64530 51.7 3.1e-214 742.7
Sed07g0954 . 106 907 NLP Transcription Factor Family AT1G64530 51.7 3.1e-214 742.7
Sed07g0955 . 67 868 NLP Transcription Factor Family AT1G64530 51.7 3.1e-214 742.7
Sed13g0765 . 143 931 NLP Transcription Factor Family AT1G64530 50.8 3.4e-213 739.2
Sed13g0768 . 67 855 NLP Transcription Factor Family AT1G64530 50.8 3.4e-213 739.2
Sed13g0766 . 143 903 NLP Transcription Factor Family AT1G64530 50.9 3.1e-206 716.1
Sed13g0767 . 67 827 NLP Transcription Factor Family AT1G64530 50.9 3.1e-206 716.1
Sed07g0953 . 259 981 NLP Transcription Factor Family AT4G24020 54.5 2.8e-199 693.0
Sed07g0954 . 185 907 NLP Transcription Factor Family AT4G24020 54.5 2.8e-199 693.0
Sed07g0955 . 146 868 NLP Transcription Factor Family AT4G24020 54.5 2.8e-199 693.0
Sed13g0765 . 222 931 NLP Transcription Factor Family AT4G24020 52.5 2.3e-193 673.3
Sed13g0768 . 146 855 NLP Transcription Factor Family AT4G24020 52.5 2.3e-193 673.3
Sed13g0766 . 222 912 NLP Transcription Factor Family AT4G24020 51.8 2.6e-184 643.3
Sed13g0767 . 146 836 NLP Transcription Factor Family AT4G24020 51.8 2.6e-184 643.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39042 PF00564 PB1 5.00E-19 CL0072 Sed TF