Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0958 ATGGCGAATCGGGGAGGTGGGTCGTTTTCATCTTTAGATGTTTCGCCACAAGAATGGAGAGGAGATGGGCTTTATACTGAGCTATGGAAGGCTTCGGCTGGGCCGCTTGTTGAAGTTCCGAGAGTTAATGAGAAGGTTTTTTATTTTCCTCAAGGTCACATGGAACAATTGGAGACATCTACAAATCAGGAGTTGAATCAGAAACTTCCTTCGTTTAATCTTTCCTCCAAAGTTCTCTGTAATGTTGTTGATGTCCGCTTGATGGCAGAGCAGGAAACTGATGAGGTTTATGCACAAATATCTTTGATGCCAGAAGGAAATCAAGAGGAACGGATGGTTCCTGATCCTTCACCTCCGGAATGTCGAAAACCGAAAGTTCATTCATTTTGCAAGGTCTTAACTGCTTCTGATACCAGCACTCATGGGGGATTCTCTGTGCTTCGAAAACATGCCACTGAATGCCTGCCTCCATTGGATATGACCCAGCAGACCCCGACTCAAGAACTTGTAGCCAAAGATCTTCATGGTTATGTGTGGCGATTCAAGCATATATTTAGAGGACAACCCCGAAGGCATTTGCTAACGACCGGATGGAGCACATTTGTTACTTCGAAGAGATTAGTTGTTGGAGATTCTTTTGTGTTCTTAAGGGGGGAGAATGGGGATTTACGAGTTGGAGTGAGGCGTCTTGCTCGCCAACATAGTAGCATGCCTTTGTCTGTGATTTCGAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCATGCCGTGCAAACTCTAACTCGCTTTGTTGTATATTATAAGCCAAGGGCGAGCCAGTTTATCGTCAGCTTGAATAAGTACATCGAAGCGATGAACCATAAATTCGTAGTTGGAATGAGGTTCAAGATGAGGTTTGAGGGAGAGGAGTCTCCAGAGAGAAGGTTTTCGGGCACCATAATCGGAGTTGACGACATGTCTTCCCACTGGCCTAATTCGAAATGGCGATCACTGAGAGTTCAATGGGATGAACTTACATCTGTTCAGAGACCTGAGAGGGTTTCACCATGGGAGATTGAACCTTTCTTGGCTCCCATGTCGCAAAGCATTCCGCACTTGGTTTCGGTAAAGAATAAAAGACCTCGACCTCCAGTTGACATTCCAGATTCTGATAATTCAACCGGAACAACTCTTCAGCATTCCGTATCTACTCAATCACATGATGATAGAACACAGCTGAGTGTTGGTGCTGCTGACATTAAAGTATTTGAAAATCATGCAACATGGCATAGCAATGATTGGAATTCTGTATCAAGGACTCCGAATGACGGTTCTTGGTTAACATCCTCTAATGCGAGTGTTTCTCAGCATCGGTTACAGGATTTGAATGACGACCATAAAAGTATTTCTGTTTGGTCGACGGTCTTCCCAGGAGCGTCGACATCACACTCGACATGTCCAACTTCACGCACGCTGAATTTGATGAGTGACCAAATAAATGACCATGGGGAAAAAGGGAGAAAAACTGAGGTGGCTCCAAGTTGCCGTTTGTTTGGGGTCGATCTCATTCATCATTCGAAACGTCCGGTTGATCAACAAATTAGCACACATAACGAAAATACCGAAAGCCATGTCAACACCTTGCTATCATCTCATGCAGTGCTGAACTCTCACCTGCCAAAGGCTTGTAAAGAAAGAAAATTAGGACTTTTACAAGCACCTCCTAAAGTGATCAAGCACAAGCAGAACGGTTCGACCAGCAGCCGAAGTCGAACCAAGGTTCAAATGCAAGGAATGGCTGTCGGTCGTGCGGTCGACCTTACCACATTGGAAGGATATCCCCAACTCATCGATGAACTGGAAAAGATGTTCGATATCAAAGGAGAGCTTCGCCCTCGTGATAAGTGGGAGATTGTCTTCACTGATGACGAAGGAGATACAATGCTCATGGGCGATTACCCGTGGAAGGAATTCTGTAACATGGTGAGAAGGATATATATATGGTCAAGTCAAGATGTGAAGACGAGTTCGGGTAGCAAACTTATGATGTCTATGATTGAATGTGACCGGACAGTAATGACCTCAGAGACGGTCGAAAGCTGA 2088 44.92 MANRGGGSFSSLDVSPQEWRGDGLYTELWKASAGPLVEVPRVNEKVFYFPQGHMEQLETSTNQELNQKLPSFNLSSKVLCNVVDVRLMAEQETDEVYAQISLMPEGNQEERMVPDPSPPECRKPKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGYVWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVVGDSFVFLRGENGDLRVGVRRLARQHSSMPLSVISSHSMHLGVLATASHAVQTLTRFVVYYKPRASQFIVSLNKYIEAMNHKFVVGMRFKMRFEGEESPERRFSGTIIGVDDMSSHWPNSKWRSLRVQWDELTSVQRPERVSPWEIEPFLAPMSQSIPHLVSVKNKRPRPPVDIPDSDNSTGTTLQHSVSTQSHDDRTQLSVGAADIKVFENHATWHSNDWNSVSRTPNDGSWLTSSNASVSQHRLQDLNDDHKSISVWSTVFPGASTSHSTCPTSRTLNLMSDQINDHGEKGRKTEVAPSCRLFGVDLIHHSKRPVDQQISTHNENTESHVNTLLSSHAVLNSHLPKACKERKLGLLQAPPKVIKHKQNGSTSSRSRTKVQMQGMAVGRAVDLTTLEGYPQLIDELEKMFDIKGELRPRDKWEIVFTDDEGDTMLMGDYPWKEFCNMVRRIYIWSSQDVKTSSGSKLMMSMIECDRTVMTSETVES 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7006966 7011177 - Sed0018314.1 Sed07g0958 719822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0958 695 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677(InterPro)
Sed07g0958 695 Gene3D - 290 362 - -
Sed07g0958 695 MobiDBLite consensus disorder prediction 372 405 - -
Sed07g0958 695 Gene3D - 579 672 - -
Sed07g0958 695 SUPERFAMILY CAD & PB1 domains 582 660 - -
Sed07g0958 695 CDD B3_DNA 127 229 IPR003340 GO:0003677(InterPro)
Sed07g0958 695 ProSiteProfiles PB1 domain profile. 584 665 IPR053793 -
Sed07g0958 695 SUPERFAMILY DNA-binding pseudobarrel domain 120 258 IPR015300 -
Sed07g0958 695 MobiDBLite consensus disorder prediction 384 405 - -
Sed07g0958 695 FunFam Auxin response factor 290 361 - -
Sed07g0958 695 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 672 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed07g0958 695 Pfam AUX/IAA family 631 667 IPR033389 -
Sed07g0958 695 Pfam AUX/IAA family 577 620 IPR033389 -
Sed07g0958 695 Pfam B3 DNA binding domain 129 229 IPR003340 GO:0003677(InterPro)
Sed07g0958 695 Gene3D - 126 230 IPR015300 -
Sed07g0958 695 Pfam Auxin response factor 255 333 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed07g0958 695 FunFam Auxin response factor 127 231 - -
Sed07g0958 695 SMART B3_2 129 231 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0958 Sed-Chr7:7006966 Sed09g0530 Sed-Chr9:5366658 3.20E-198 dispersed
Sed01g3807 Sed-Chr1:67230083 Sed07g0958 Sed-Chr7:7006966 5.80E-213 wgd
Sed13g0775 Sed-Chr13:5620801 Sed07g0958 Sed-Chr7:7006966 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39043 PF02362 B3 2.30E-21 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0958 K14486 - csv:101213942 1089.33