Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g0965 | ATGGAAGATACTCTGTTTTTTCCGGTCAAGTTCACAGAGCACCGTAACTTCACCAAGAAATTCTCCTCCAAGAAACGCCACCCTTTTGAGAATCGGGTCGTCCGGATCTCCGTGACCGACCCGGATGCCACGGATTCCTCCGGCGACGAAGACGACGAGTTTTTTGAGAAACAGAGAGTCAAGAAGTACGTCGATGAGATCAGAATCCAAACAGGGTGTCGGAATAGCTCTGTTCCCACTTGCCGCAAACGGCCCGCCGGTGATGGGTCCGGTTTGCGGCGGCCGGGAAAGGCGGGTTTGGTTACGAACGGGAAGAAATTTCGCGGCGTACGGCAGCGTCCGTGGGGTAAATGGGCGGCGGAGATTAGAGATCCGGCTCGCCGTGTCCGGTTGTGGTTGGGGACTTACGACACGGCGGAGGAAGCTGCTATGGTTTACGACAACGCCGCCATTCAGCTTCGGGGACCGGACGCTTTGACTAATTTCGCGACGCCACCGCCGCCCGAGGCCGCGGCGGCGACGGAAGAGAAGGTTTCCCCTGTTTCCGGCTCTTTTTACTCCTCCGGCGAGGAGTCTCACAATTTTCCGTCGCCGACTTCGGTTCTCCACTTCAGAACGCTGTCGCCGGAAGTACCCGAAAAACCCACAAAATCCGACGAGTTTCAGAACCCGCCGCCGTCTATCCCACCGCTCGCCGGCGACCAATTTCATGAATCTTCAGGGGAAACGTCTTTTCCCTATTACAACGATTTCCCCAAAATCGACGACGTATTTAAGCTTCCGAGCCCTGATTCGCCGATCTTTTTCGACGAACAGCCTATGTTTTTCGAGTACACCATGTTTAATGATGGTTTTAGTGAAATTTTTCCGAATTTGCCTGAGGATTTTGGGTCGCCATTGTTGTCTTCTTCGTTCGGTCAAGGGGCCGACGATTATTTCCAAGAGATTTTGATGGGGTAG | 960 | 53.85 | MEDTLFFPVKFTEHRNFTKKFSSKKRHPFENRVVRISVTDPDATDSSGDEDDEFFEKQRVKKYVDEIRIQTGCRNSSVPTCRKRPAGDGSGLRRPGKAGLVTNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATPPPPEAAAATEEKVSPVSGSFYSSGEESHNFPSPTSVLHFRTLSPEVPEKPTKSDEFQNPPPSIPPLAGDQFHESSGETSFPYYNDFPKIDDVFKLPSPDSPIFFDEQPMFFEYTMFNDGFSEIFPNLPEDFGSPLLSSSFGQGADDYFQEILMG | 319 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 7070016 | 7071376 | - | Sed0015584.1 | Sed07g0965 | 719829 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g0965 | 319 | PRINTS | Ethylene responsive element binding protein signature | 107 | 118 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g0965 | 319 | PRINTS | Ethylene responsive element binding protein signature | 129 | 145 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g0965 | 319 | SUPERFAMILY | DNA-binding domain | 106 | 163 | IPR016177 | GO:0003677(InterPro) | |
Sed07g0965 | 319 | SMART | rav1_2 | 106 | 169 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g0965 | 319 | Gene3D | AP2/ERF domain | 105 | 164 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g0965 | 319 | ProSiteProfiles | AP2/ERF domain profile. | 106 | 163 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g0965 | 319 | FunFam | Ethylene-responsive transcription factor 2 | 105 | 164 | - | - | |
Sed07g0965 | 319 | CDD | AP2 | 105 | 162 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g0965 | 319 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 34 | 218 | IPR050913 | - | |
Sed07g0965 | 319 | MobiDBLite | consensus disorder prediction | 76 | 101 | - | - | |
Sed07g0965 | 319 | Pfam | AP2 domain | 106 | 155 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3511 | Sed-Chr1:64243199 | Sed07g0965 | Sed-Chr7:7070016 | 4.30E-39 | dispersed | |
Sed02g1709 | Sed-Chr2:52118442 | Sed07g0965 | Sed-Chr7:7070016 | 1.30E-34 | dispersed | |
Sed07g0965 | Sed-Chr7:7070016 | Sed13g0805 | Sed-Chr13:5981464 | 2.20E-45 | dispersed | |
Sed01g3830 | Sed-Chr1:67478298 | Sed07g0965 | Sed-Chr7:7070016 | 1.50E-54 | wgd | |
Sed13g0091 | Sed-Chr13:591266 | Sed07g0965 | Sed-Chr7:7070016 | 3.40E-118 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39044 | PF00847 | AP2 | 8.20E-14 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g0965 | - | - | - | 0.0 |