Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0965 ATGGAAGATACTCTGTTTTTTCCGGTCAAGTTCACAGAGCACCGTAACTTCACCAAGAAATTCTCCTCCAAGAAACGCCACCCTTTTGAGAATCGGGTCGTCCGGATCTCCGTGACCGACCCGGATGCCACGGATTCCTCCGGCGACGAAGACGACGAGTTTTTTGAGAAACAGAGAGTCAAGAAGTACGTCGATGAGATCAGAATCCAAACAGGGTGTCGGAATAGCTCTGTTCCCACTTGCCGCAAACGGCCCGCCGGTGATGGGTCCGGTTTGCGGCGGCCGGGAAAGGCGGGTTTGGTTACGAACGGGAAGAAATTTCGCGGCGTACGGCAGCGTCCGTGGGGTAAATGGGCGGCGGAGATTAGAGATCCGGCTCGCCGTGTCCGGTTGTGGTTGGGGACTTACGACACGGCGGAGGAAGCTGCTATGGTTTACGACAACGCCGCCATTCAGCTTCGGGGACCGGACGCTTTGACTAATTTCGCGACGCCACCGCCGCCCGAGGCCGCGGCGGCGACGGAAGAGAAGGTTTCCCCTGTTTCCGGCTCTTTTTACTCCTCCGGCGAGGAGTCTCACAATTTTCCGTCGCCGACTTCGGTTCTCCACTTCAGAACGCTGTCGCCGGAAGTACCCGAAAAACCCACAAAATCCGACGAGTTTCAGAACCCGCCGCCGTCTATCCCACCGCTCGCCGGCGACCAATTTCATGAATCTTCAGGGGAAACGTCTTTTCCCTATTACAACGATTTCCCCAAAATCGACGACGTATTTAAGCTTCCGAGCCCTGATTCGCCGATCTTTTTCGACGAACAGCCTATGTTTTTCGAGTACACCATGTTTAATGATGGTTTTAGTGAAATTTTTCCGAATTTGCCTGAGGATTTTGGGTCGCCATTGTTGTCTTCTTCGTTCGGTCAAGGGGCCGACGATTATTTCCAAGAGATTTTGATGGGGTAG 960 53.85 MEDTLFFPVKFTEHRNFTKKFSSKKRHPFENRVVRISVTDPDATDSSGDEDDEFFEKQRVKKYVDEIRIQTGCRNSSVPTCRKRPAGDGSGLRRPGKAGLVTNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATPPPPEAAAATEEKVSPVSGSFYSSGEESHNFPSPTSVLHFRTLSPEVPEKPTKSDEFQNPPPSIPPLAGDQFHESSGETSFPYYNDFPKIDDVFKLPSPDSPIFFDEQPMFFEYTMFNDGFSEIFPNLPEDFGSPLLSSSFGQGADDYFQEILMG 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7070016 7071376 - Sed0015584.1 Sed07g0965 719829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0965 319 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g0965 319 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g0965 319 SUPERFAMILY DNA-binding domain 106 163 IPR016177 GO:0003677(InterPro)
Sed07g0965 319 SMART rav1_2 106 169 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g0965 319 Gene3D AP2/ERF domain 105 164 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g0965 319 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g0965 319 FunFam Ethylene-responsive transcription factor 2 105 164 - -
Sed07g0965 319 CDD AP2 105 162 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g0965 319 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 34 218 IPR050913 -
Sed07g0965 319 MobiDBLite consensus disorder prediction 76 101 - -
Sed07g0965 319 Pfam AP2 domain 106 155 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3511 Sed-Chr1:64243199 Sed07g0965 Sed-Chr7:7070016 4.30E-39 dispersed
Sed02g1709 Sed-Chr2:52118442 Sed07g0965 Sed-Chr7:7070016 1.30E-34 dispersed
Sed07g0965 Sed-Chr7:7070016 Sed13g0805 Sed-Chr13:5981464 2.20E-45 dispersed
Sed01g3830 Sed-Chr1:67478298 Sed07g0965 Sed-Chr7:7070016 1.50E-54 wgd
Sed13g0091 Sed-Chr13:591266 Sed07g0965 Sed-Chr7:7070016 3.40E-118 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39044 PF00847 AP2 8.20E-14 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0965 - - - 0.0