Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0968 ATGTCAAGCTTCTGCCTGAGAAAAATGATGAGGAATAGCCTCATTTTTGTTGTGATTTTGTTGTTTTTAGTGACCATCTTGCCCTTGGCTCTAACTGAGCCAGTTGAAGACAAGCAAGCTTTGCTTGATTTCTTCCACAATATCCCCCATTCTCCCTCTCTCAATTGGAATGAGACAAGTTCTGTGTGCAAAGTTTGGACAGGAGTGTTTTGCAACTCTGATGAGTCTAGAGTAGTAGCCGTTCGATTACCCGGGGCTGGTCTGCTCGGTCCGATCCCTGTGAATACTCTTAGCCGCCTATCTGCGCTTGAGACTCTAAGCCTTAGATTAAATAGGATATCAGGACCTTTCCCTTCCGATTTTTCCAAGCTAGAAAACTTGAGTTCCTTATATCTGCAATTCAACAAATTTTCTGGCCCTTTGCCTTCGGATTTTTCGGTGTGGAGGAACCTTAGTGTTGTCGATCTTTCGAACAATTTATTTAATGGGAGTATTCCTTCTTCTATCTCACAGTTGAGTCATCTAACAGTTTTAAATCTTGCAAACAACTCGTTTTCGGGCGACATACCGGACCTTGATATTCCTAGTTTGCAACGGTTAGATTTGTCCAATAATAATCTCACAGGAAATGTGCCTCATTCTCTTCAAAGATTTCCAAGTTGGGTGTTCTCTGGTAACAATGTTACCATAGAACATGCTGCAATTCCTCCATCTTATCCGCTCCAGCCTCCCGGTGCTCGACCGACACAAAAAGGAAAACGACTAAGCGAATCTTCAATACTAGGCATTGCAATTGGTGGTTCTGTTGTTGGGTTTATTTTGCTAGTTGTTTTGTTGACTGCTTGCTGGTTGAAAAGGAAAAAAGAAAATGCTAGTTCTTCTATGGAGCTGAAAAAGAAGGAAATGTCTGTGAAGAGGACTTTTGAGAGCCAAGAACAAAAGAACAACCTTAGTTTCTTCCAGGATTCTAACCTTGCATTTGACTTGGAAGATCTGTTGAGAGCGTCTGCCGAAGTTCTCGGCAAGGGAACCTTTGGAGTGAGCTACAAGGCAGCTTTGGAGGACTCATCGACCGTAGTAGTGAAGAGGCTGAATCAAGTGACTGTTGGAAAACGAGAATTCGAACAGCAGATGGAGTTGATTGGAAAGATTGAGCACGAGAACGTCGTTTCGTTGAGAGCGTACTATTATTCAAAGGATGAGAAGCTCATGGTCTATGACTACTATGAACAAGGGAGCGTGTCTGCAATGTTGCACAGTAAGGAAGGAGATGGGTTACCCGCGTTAGATTGGGATACTCGGATGAAAATCGCTATCGGAGCGGCTCGAGGTCTTGCTCATATTCACACAGAAAAGGGTGCAAAATGTTCCCACGGAAACGTGAGAGCCTCAAACATTTTCCTCAACTCCAAAGGATACGGATGTGTATCCGATGTTGGTTTGGCCGTGTTGATGAATTCAATACAACCACCAGTCACCAGAACGCCTGGTTACCGAGCGCCCGAATTGACCGACATTCGTAGAGCATCAGAAGCAGCAGATGTCTACAGTTTCGGGGTTGTGCTGCTTGAGCTCCTGACTGGAAAATCTCCCATACATGTTGAAGGTTGCAATGAAGTTGTAAATTTAGTAAGGTGGGTGAACTCTGTGGTGAGGGAGGAATGGACAGCAGAAGTGTTTGATGTGGAGCTTCTCAAGTATCCAAATATAGAAGAAGAAATGGTGGAGATGCTGCAAATTGGGTTGTCTTGTGTTGCCAAAATGCCAGAGCAGAGGCCGAAAATGATGGACGTAGCATCGAGAATCGAGCAAGTTCGACAACTGAGTACTGGAACCCGACCATCATCGGGGTCAAAATCAGCTTATTCGACTCCAGTTCATGTAATGGAGATCGGTTCTTCCTCATATTCGCATTGA 1917 44.18 MSSFCLRKMMRNSLIFVVILLFLVTILPLALTEPVEDKQALLDFFHNIPHSPSLNWNETSSVCKVWTGVFCNSDESRVVAVRLPGAGLLGPIPVNTLSRLSALETLSLRLNRISGPFPSDFSKLENLSSLYLQFNKFSGPLPSDFSVWRNLSVVDLSNNLFNGSIPSSISQLSHLTVLNLANNSFSGDIPDLDIPSLQRLDLSNNNLTGNVPHSLQRFPSWVFSGNNVTIEHAAIPPSYPLQPPGARPTQKGKRLSESSILGIAIGGSVVGFILLVVLLTACWLKRKKENASSSMELKKKEMSVKRTFESQEQKNNLSFFQDSNLAFDLEDLLRASAEVLGKGTFGVSYKAALEDSSTVVVKRLNQVTVGKREFEQQMELIGKIEHENVVSLRAYYYSKDEKLMVYDYYEQGSVSAMLHSKEGDGLPALDWDTRMKIAIGAARGLAHIHTEKGAKCSHGNVRASNIFLNSKGYGCVSDVGLAVLMNSIQPPVTRTPGYRAPELTDIRRASEAADVYSFGVVLLELLTGKSPIHVEGCNEVVNLVRWVNSVVREEWTAEVFDVELLKYPNIEEEMVEMLQIGLSCVAKMPEQRPKMMDVASRIEQVRQLSTGTRPSSGSKSAYSTPVHVMEIGSSSYSH 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7106765 7109845 - Sed0020570.2 Sed07g0968 719832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0968 638 FunFam Probable inactive receptor kinase RLK902 34 193 - -
Sed07g0968 638 PANTHER OS05G0588300 PROTEIN 18 617 IPR050994 -
Sed07g0968 638 Pfam Leucine Rich Repeat 196 217 IPR001611 GO:0005515(InterPro)
Sed07g0968 638 Pfam Leucine Rich Repeat 150 172 IPR001611 GO:0005515(InterPro)
Sed07g0968 638 Pfam Leucine Rich Repeat 174 191 IPR001611 GO:0005515(InterPro)
Sed07g0968 638 SUPERFAMILY L domain-like 46 220 - -
Sed07g0968 638 Pfam Leucine rich repeat 92 137 IPR001611 GO:0005515(InterPro)
Sed07g0968 638 Pfam Protein tyrosine and serine/threonine kinase 338 601 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g0968 638 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Sed07g0968 638 Gene3D Transferase(Phosphotransferase) domain 1 409 620 - -
Sed07g0968 638 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 409 615 - -
Sed07g0968 638 Gene3D Phosphorylase Kinase; domain 1 298 408 - -
Sed07g0968 638 FunFam pollen receptor-like kinase 1 303 408 - -
Sed07g0968 638 ProSiteProfiles Protein kinase domain profile. 334 605 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g0968 638 SUPERFAMILY Protein kinase-like (PK-like) 338 602 IPR011009 -
Sed07g0968 638 Gene3D Ribonuclease Inhibitor 34 240 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3832 Sed-Chr1:67510228 Sed07g0968 Sed-Chr7:7106765 1.60E-164 dispersed
Sed07g0968 Sed-Chr7:7106765 Sed14g0561 Sed-Chr14:5658830 7.80E-119 dispersed
Sed07g0967 Sed-Chr7:7106765 Sed07g0968 Sed-Chr7:7106765 1.70E-307 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79444 PF07714 PK_Tyr_Ser-Thr 1.30E-32 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0968 - - - 0.0