Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g0988 ATGGCGGCCGGCCTCTCCTCCGCCGCCGTATCGCCCAAACCATTCCGCCACCTCTTCCTCCTTCCCTCCAATCTCTCCCCTAAACCTCCGGCTCCCTTTCTCTTTCCGCCGTCCGCCCTCCGGAACAGTAGAATCCGATGGAATCTCCGGCGAAAAACGCTGCTCACCGTCTGCGTGCTCCTCGGCGATCAGAACAGCTCCGGCGAGGTGGAGAGCCTCTCGGACGAAGAATCGCCGATTGTAGTCCCTCAGATCCCGCCGCCTCGCGTTGCGGAGAGATTGGCGAGGAAGAAATCGGAGCGATCTACTTATCTCATCGCGGCGGTTATGTCTAGCTTTGGAATTACTTCCATGGCCGTCATGGCGGTTTACTCCAGATTTTACTGGCAAATGGAGGGCGGAGAGATTCCGTTTTCTGAAATGTTTGGTACATTTTCGCTCTCCGTTGGTGCTGCTGTAGGCATGGAGTTTTGGGCAAGATGGGCGCATAGGGCTCTTTGGCACGCTTCTTTGTGGCATATGCACCAGTCTCACCATAAACCAAGAGAAGGACCGTTTGAATTGAACGATGTTTTCGCCATCATCAACGCTGTGCCCGCCATAGCTCTTCTCTCTTACGGCTTCTTCCACAAAGGCCTCGTCCCCGGTCTCTGCTTCGGCGCTGGCCTCGGCATTACTGTGTTTGGGATGGCCTATATGTTCGTCCACGACGGTCTTGTTCACAGAAGATTCCCTGTGGGTCCCATTGCCAACGTGCCTTATTTTAGAATGGTCGCTGCTGCTCACAAGCTTCACCATTCGGACAAGTTTAACGGTGTGCCCTACGGGTTGTTTTTGGGACCAAAGGAATTAGAAGAAGTGGGAGGCCTAGAAGAATTGGAGAAGGAAATCAACAGAAGAATAAAATCAACGGCCAAAAATTAG 924 53.25 MAAGLSSAAVSPKPFRHLFLLPSNLSPKPPAPFLFPPSALRNSRIRWNLRRKTLLTVCVLLGDQNSSGEVESLSDEESPIVVPQIPPPRVAERLARKKSERSTYLIAAVMSSFGITSMAVMAVYSRFYWQMEGGEIPFSEMFGTFSLSVGAAVGMEFWARWAHRALWHASLWHMHQSHHKPREGPFELNDVFAIINAVPAIALLSYGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHRRFPVGPIANVPYFRMVAAAHKLHHSDKFNGVPYGLFLGPKELEEVGGLEELEKEINRRIKSTAKN 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7250467 7254132 + Sed0020922.1 Sed07g0988 719852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g0988 307 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 1 304 IPR045019 GO:0009507(PANTHER)|GO:0010291(PANTHER)|GO:0016119(PANTHER)|GO:0016123(PANTHER)|GO:0016491(InterPro)
Sed07g0988 307 Pfam Fatty acid hydroxylase 151 279 IPR006694 GO:0005506(InterPro)|GO:0008610(InterPro)|GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0988 Sed-Chr7:7250467 Sed07g0990 Sed-Chr7:7250467 4.90E-151 dispersed
Sed07g0988 Sed-Chr7:7250467 Sed07g0989 Sed-Chr7:7250467 1.30E-124 tandem
Sed01g3857 Sed-Chr1:67823155 Sed07g0988 Sed-Chr7:7250467 2.10E-95 wgd
Sed13g0115 Sed-Chr13:768483 Sed07g0988 Sed-Chr7:7250467 4.20E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g0988 K15746 - csv:101212140 514.612