Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1017 ATGCCTTCATGGTGGGGGAAGCCATCATCCAAAGAAGTAAAGAAGAAAACGAGCAAGGAAAGTTTCATTGACTCATTACACCGTAAGTTTAAGAATTCACCTGATGGTAAAGTAAACAGCAGATCAGGAAGTTCTCGTAGACGTGGTGGTGACACTATATCTGAGAAGGGGTCTAAACCACCACTATTAGGATCATCATCACCTTCCAAAGAAGTATCTAGATGTCAAAGTTTTGCTGAAAGATCACGTTCTCACCAACTTCCACTTCCAGATTTGCACTCTGCAGGTGTAAGTCGCACAGACTCTTGGATTAGTGTGGCAGCGAAATCAAAATTAGAAAGAATCTCCAAGACGTCTTCATTCCTTCCCCTCCCTAGACCTGCATGTATACGAAGTAGGCCAGATCCTGCAGATTTGGATACAGATTTGGTCACTGGTTCTGTTTCTGGCGAGTCCTTGGGTGATAGCGATGACCTCAATGATTCCCATCAACGTAGTCCTCAGGCAACTGACTATGGCATTGGGACTAGAACTGTGATAGGTTCTACTGAACCCAGCAGTGCAACTCTCAAGGACCAGTCTTCTACTACTGTGCCAATAAATTCAAAAGAGGGTAAGATAGGGGAAAGTCTTTCATTTCCTCCAAAGAATCCTTCAATACCTAAGCGAAGGCCTTTAAGCAGCAATATAACAAATCTACAAGTTCCTCGTCATGGGGCTTTTTTTAGTGCACCAGATAGTTCCATGTCTAGTCCCTCTAGAAGCCCTTTGAGGGTATTTAGCACTGAGCAAGTCATGAACACTGCTGTTTGGGCTGGAAAGTCCCACCCAGATGTCATTTTCGGTGGGTCTGGCCACTGTTCCAGCCCTGGTTCTGGTCACAATTCAGGGCACAACTCTATGGGGGGTGATGCGGCAGGCCACTTCTTTTGGCAACAAAGTAGGGGCAGCCCCGAATATTCACCAGTGCCTAGTTCTAGAATGACTAGCCCTGGCCCAAGCTCCAGAATTCAAAGTGGTGCTGTTACACCTATTCATCCTAGAGCTGGAGCTCCCCCTGCTGGGTCACAAACTTGCGGGCCTGAGGAGAAACAAACTCATCGCTTGCCTCTTCCTCCCATAGCAATCTCAAACTCCTATCCATTTTCTCATTCAAATTCTGCAGTGACATCTCCTTCGGTGCCTAGGAGTCCAGGAAGGACGGAGACTCCAGCAAGCCCAGGTTCACGCTGGAAAAAGGGGAAGCTACTGGGTCGGGGAACATTTGGGCACGTATATGTTGGTTTTAATAGTGAAAGTGGAGAAATGTGTGCAATGAAGGAGGTCATGTTATTTTCTGATGATGCAAAGTCCAAGGAAAGTGCTAAACAATTAATGCAGGAAATTGCTTTACTAAGTCGTTTACGGCATCCTAACATCGTGCAGTATTACGGTTCAGAAACAATGGATGATAAACTCTACATATATCTGGAATATGTATCTGGTGGCTCTATTTATAAATTACTACAAGACTATGGACAATTTGGGGAACTGGCCATTCGCAGCTATACTCAACAAATACTATCAGGGCTTGCATATTTACATGCTAAAACTACAGTGCACAGGGATATTAAAGGAGCAAACATACTAGTTGACCCAAATGGCCGTGTTAAGTTGGCAGATTTTGGGATGGCGAAGCATATCACGGGCCAATCATGTCCACTGTCGTTTAAGGGCAGCCCTTACTGGATGGCACCTGAGGTTATAAAGAACTCAAATGGTTGCAACCTTGCGGTTGATATTTGGAGTCTTGGATGCACTGTTCTGGAGATGGCTACTACAAAGCCACCTTGGAGCCAGTATGAAGGGGTTGCTGCCATGTTTAAGATTGGTAATAGCAAAGAACTCCCAGTAATTCCAGAAAACCTCTCAGGTGATGGCAAGGATTTTGTGAGACTATGTCTGCAACGAAACCCGCATCATCGACCTACAGCGGCTCAACTTTTAGAGCATCCTTTTGTCAAATATGCTGCACCTGTAGAGAGGCCTATTTTGAGCTCTGAACCGTCTGATGCAACTCCTGGGTTTACAAACGGAGTGAAGACTTTGGGTATTGGCCAATCACGGATTACTTCAGTGGACTCAGATTGTAGACTTGCAGTTCATTCTTCAAGAGTCTCAAAAGCTGTTCTTCATGCCAGTGAAATCAAAATTCCAAGAAACATATCATGTCCTGTTTCCCCTATTGGAAGCCCTCTTTTGCACTCGCGATCATCTCAGCATCCCAGTGGAAGAATGTCTCCTTCACCTATATCGAGTCCGCGAACAACTTCAGGCTCGTCGACACCTTTGACAGGATGCGGCGGTGCAATTCCTTACAACCACCTGAAACAAGCTATATGCTTGCAAGAGGGATTTGGAAGCACGCCAAAGTCCTCAAGTAATAGTCCATACAGCAGTGGTCTCTCCTTCCATGATTCAAATCCCGACATTTTTCGAGGGTTGCAGCCTGGGACTCCCGTCTTCTCTGAAACGATACCTGAAAACGATATCTTGGGAAAGCAAGTTGGAGTAGGGAGGCCTGCTCATGGTGAATTGTATAATGGACAGCAGGTATTGGCTGATCGAGTGTCTCGACAGCTCCTGAGGGATCATGTTAAAACAAAACCTTCTCTTGATTTGAGTCCTAGCCCTACATTGTCTGGCCGCATGAATGGTATCCGACTCCGAATGCATCAACCTACTAGAGATAGTTGTCAAGAGTAA 2745 45.54 MPSWWGKPSSKEVKKKTSKESFIDSLHRKFKNSPDGKVNSRSGSSRRRGGDTISEKGSKPPLLGSSSPSKEVSRCQSFAERSRSHQLPLPDLHSAGVSRTDSWISVAAKSKLERISKTSSFLPLPRPACIRSRPDPADLDTDLVTGSVSGESLGDSDDLNDSHQRSPQATDYGIGTRTVIGSTEPSSATLKDQSSTTVPINSKEGKIGESLSFPPKNPSIPKRRPLSSNITNLQVPRHGAFFSAPDSSMSSPSRSPLRVFSTEQVMNTAVWAGKSHPDVIFGGSGHCSSPGSGHNSGHNSMGGDAAGHFFWQQSRGSPEYSPVPSSRMTSPGPSSRIQSGAVTPIHPRAGAPPAGSQTCGPEEKQTHRLPLPPIAISNSYPFSHSNSAVTSPSVPRSPGRTETPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVMLFSDDAKSKESAKQLMQEIALLSRLRHPNIVQYYGSETMDDKLYIYLEYVSGGSIYKLLQDYGQFGELAIRSYTQQILSGLAYLHAKTTVHRDIKGANILVDPNGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPVIPENLSGDGKDFVRLCLQRNPHHRPTAAQLLEHPFVKYAAPVERPILSSEPSDATPGFTNGVKTLGIGQSRITSVDSDCRLAVHSSRVSKAVLHASEIKIPRNISCPVSPIGSPLLHSRSSQHPSGRMSPSPISSPRTTSGSSTPLTGCGGAIPYNHLKQAICLQEGFGSTPKSSSNSPYSSGLSFHDSNPDIFRGLQPGTPVFSETIPENDILGKQVGVGRPAHGELYNGQQVLADRVSRQLLRDHVKTKPSLDLSPSPTLSGRMNGIRLRMHQPTRDSCQE 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7384815 7390725 + Sed0017998.1 Sed07g1017 719881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1017 914 MobiDBLite consensus disorder prediction 165 203 - -
Sed07g1017 914 ProSitePatterns Protein kinases ATP-binding region signature. 417 440 IPR017441 GO:0005524(InterPro)
Sed07g1017 914 SMART serkin_6 411 667 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1017 914 MobiDBLite consensus disorder prediction 742 779 - -
Sed07g1017 914 MobiDBLite consensus disorder prediction 314 341 - -
Sed07g1017 914 ProSiteProfiles Protein kinase domain profile. 411 667 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1017 914 CDD STKc_MEKK1_plant 410 667 - -
Sed07g1017 914 MobiDBLite consensus disorder prediction 284 413 - -
Sed07g1017 914 MobiDBLite consensus disorder prediction 59 83 - -
Sed07g1017 914 SUPERFAMILY Protein kinase-like (PK-like) 409 668 IPR011009 -
Sed07g1017 914 Gene3D Transferase(Phosphotransferase) domain 1 409 685 - -
Sed07g1017 914 FunFam Mitogen-activated protein kinase kinase kinase 409 691 - -
Sed07g1017 914 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 46 670 IPR050538 -
Sed07g1017 914 MobiDBLite consensus disorder prediction 1 100 - -
Sed07g1017 914 MobiDBLite consensus disorder prediction 9 54 - -
Sed07g1017 914 Pfam Protein kinase domain 412 667 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1017 914 MobiDBLite consensus disorder prediction 378 404 - -
Sed07g1017 914 MobiDBLite consensus disorder prediction 745 779 - -
Sed07g1017 914 MobiDBLite consensus disorder prediction 115 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0842 Sed-Chr3:5091754 Sed07g1017 Sed-Chr7:7384815 8.50E-66 dispersed
Sed07g1017 Sed-Chr7:7384815 Sed14g0232 Sed-Chr14:2566224 4.40E-115 dispersed
Sed14g0737 Sed-Chr14:7643148 Sed07g1017 Sed-Chr7:7384815 1.30E-28 dispersed
Sed13g0133 Sed-Chr13:862964 Sed07g1017 Sed-Chr7:7384815 0.00E+00 wgd
Sed05g0485 Sed-Chr5:3351227 Sed07g1017 Sed-Chr7:7384815 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79447 PF00069 Pkinase 4.40E-71 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1017 K20717 - csv:101214961 1475.69