Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1049 ATGGGTATGGAGTTCAAACGGTTCTTTCTCGTTTACACTCTGTTTTTCGAGCTCTGCATTTGGAGCTCTAATGGCGTGTTAGACCGAAATTTGATTGCTGCACAGAGAGAAAGTTTGATTTCTTTCAAAGCTTCGTTGGAGACCTCTAGAAATCTTCCATGGAACTCATCGGTTCCTCACTGTTTATGGGTCGGAGTTTCTTGCCGGCTCGGTCGAGTTACAGAGCTCTCTGTTTCATCTCGTTCGCTCATAGGCCAAATCTCTCCTTCCCTTTTCAACATTTCGAGCCTCTCTGTTCTTGACCTTTCGAATAACTTTTTCTATGGCTCAATCCCACATCAGATTTCTCATCTTCAGAGCTTGACAGTGCTTTCTCTCGGCCAAAATCAGTTTTCCGGCGAGTTTCCGATCGGAATCACTGAGTTGACTCAGTTGGAGAATCTGAAGTTGGGGACTAATTTATTCACCGGGAAAATCCCGCCGGAGCTTGGGAATTTGAAGTTGCTACAAACCCTTGACCTCTCCGGCAATGCCTTCGCCGAAAATGTTCCGACCCATATCGGAAATTTGACGAGGATTTTATCGTTGGACCTTGGCAACAATCTCTTATCAGGTTCACTTCCATTGAGCATTTTTACTGAGCTTAAATCTTTAACTTCTTTGGACATTTCAAACAACTCGTTTTCTGGTTCCATCCCGCCGGAAATTGGTAATCTAGAGAATTTGACTGATCTTTATATCGGCATTAACCACTTTTCCGGTGAGTTGCCGCCGGAAGTTGGTAATCTCGTGATGCTTGAGAACTTTTTTTCGCCTTCTTGTTCTTTAACTGGTCCATTGCCTGAAAAACTGTCAAAGTTGAAATCGTTGAGCAAATTAGACCTTTCATATAACCCACTTGGATGTTCTATCCCAAAATCTATTGGTGATTTGCAGAACTTGACAATATTGGATCTGGTTTATACTGAGCTTAATGGTTCTATTCCGGCTGAGCTTGGGAAGTGTAGAAATTTGAGAACATTGATGCTTTCATTCAACTTTCTATCTGGAGAGTTGCCACATGAGCTTTCAGAGCTTCCCATGTTGACATTTTCTGCTGAGAAGAATCAGCTTTCTGGGCCATTGCCTTCCTGGCTTGGCAAATGGGATCGTGTCGAATCGATTTTACTCTCAAGTAATCGGTTTACGGGGGAAATCCCACCTGAGATTGGTAATTGCTTGATGCTTAATCACCTTAGTTTGAGTAATAACTTGTTGACAGGTCCAATACCTAAAGAGATTTGCAATGCTTCATCTTTGATGGAGATTGATCTCGACAGTAATTTCCTTTCGGGTACGATCGACGACACGTTTGTGGTGTGTGGAAACCTTACACAGTTGGTTTTGGTAGACAATCAGATTGATGGTGCAATACCAGAGTACTTCTCTGATCTTCCCCTACTGGTAATCAACCTCGACTCGAATAATTTTACCGGTTCATTACCAAGAAGCATATGGAACTCGGTTAATTTGATGGAGTTTTCTGCTGCTAATAACCGGTTGGAGGGCCATCTCCCATCAGAAATTGGTTATGCAGGTTCACTTCAGAGGCTTGTTCTCAGCAACAATAGGTTGACAGGTACAATACCAGATGAGATTGGTAATCTCACAGCCCTTTCTGTTCTGAATTTGAATTCAAATCTGCTTGAAGGAACTATCCCTGCCTTGCTTGGAGATTGCATTGCACTTACCACCTTGGACTTGGGAAACAACAGTCTAAACGGGTCGATACCGGAAAGACTTGCAGACCTTGCCGAATTACAGTGCCTCGTTCTTTCGCACAACAAGTTATCTGGAGCAATACCTTCCAAGCCATCTGCTTATTTTCAACAGGTGACAATTCCTGATTTGAGTTTTGTTCAGCATCATGGTGTTTTTGATGTGTCTCATAATAGATTGACTGGTACCATACCTGATGAACTGGGGAATTGTGTTGTTGTGGTGGATCTTTTACTGAACAATAATCTACTTTTAGGAGAAATTCCTAAATCTCTATCTCACTTAACAAACTTGACAACCTTGGATTTGTCTAGCAATATGCTTACCGGCCCGATTCCCGCAAAGATCTGCGATGCTCTCAAGCTCCAAGGCCTGTATCTTGGGAATAATCACCTCACGGGAACAATCCCCGAAAGCTTGAGTCATTTGAGTAGCTTGGTAAAGTTGAACTTAACTGGTAATAAGTTATCTGGTTTGGTTCCAAAAGATCTTGGTGATCTGAAAGCATTAACTCATTTAGATTTAAGTTCTAATGAGTTGGATGGTGATCTTCCTTCTTCTCTATCCAGCATGTTGAATCTTGTGGGGCTTTATGTACAGGAGAACATGCTTTCAGGCCAGGTTGTTGAGCTTTTTCCAAGTTCCATGACATGGAAGATTGAAACTTTGAATTTGAGTACTAACTATTTTGAGGGCGTACTTCCGCCAACATTAGGAAACCTTTCATACTTGACAACCTTGGATCTTCATGGTAATAAGTTCACAGGGCCAATCCCTTCAGATCTTGGGGATCTTATGCAACTCGAGTACTTCGATATTTCGAATAACAGTCTCTCAGGAGAGATTCCAGAGAAAATATGCAGCCTGATCAATATGTTTTACCTGAACTTGGCAGAAAACAGTCTGGAAGGGCCAATTCCAAGAAGTGGCATTTGCCAGAATATATCCAAAAGTTCACTTGTTGGCAACAAGGACCTTTGTGGGAGAATCATGGGTTTCAATTGCCAGATCAAAAGGTTAGAGAGATCTGCAGTCTTGAATGGTTGGAGCATTGCTGGGATTATCATCACAAGTGTTCTTATCATTCTTACGGTGGCATTCGCCATGCGAAGACGGATTCTTAGAAGCTACAGAGATAATGATCCAGAGGATATCGAGGAAAGCAAATTAAACAGTTTCATAAACCACAATCTCTATTTCTTAAGCAGCAGTCGGTCGAAAGAGCCTTTGAGCATCAATGTCGCCATGTTCGAGCAACCCCTTCTGAAATTAACTTTGGTTGATATCCTTGAAGCAACCAATAACTTCTGTAAAACAAACATTATTGGAGATGGCGGATTCGGGACCGTATACAAGGCCACTTTGCCTGATGGAAAAATCGTTGCTGTGAAGAAGCTAAGTGAAGCAAAAACACAGGGGCACAGAGAATTTATTGCTGAAATGGAAACTATAGGCAAAGTAAAGCACCAAAACCTTGTTTCACTTCTTGGCTACTGCTCTCTTGGGGAGGAGAAGCTCCTTGTCTATGAGTATATGGTGAATGGCAGCTTGGATCTTTGGCTGAGAAACCGAACGGGTGCTCTTGAAGTTCTTAACTGGGAGACTCGCTTCAAAGTCGCTTCAGGCGCAGCCCGTGGATTGGCATTTCTCCACCATGGATTCATCCCCCACATCATTCATAGAGATGTCAAAGCAAGCAACATACTCCTCAATGAAGACTTTGAACCAAAAGTTGCTGACTTTGGATTGGCAAGACTGATCAGTGCTTGTGAGACTCATGTCACAACAGAGATTGCTGGAACCTTTGGTTACATCCCGCCCGAGTACGGGCAGAGCGGGAGGTCAACCACGAAAGGAGATGTTTATAGCTTCGGTGTGATTCTGCTGGAACTGGTAACTGGGAAGGAACCAACTGGACCTGACTTCAAAGAGATTGAGGGTGGAAATCTGGTTGGTTGGGTGTTTCAGAAGGTCAAGAAGGGTCAAGCTGCAGACGTTCTCGACGTGACCGTACTGAATGCGGATTCAAAGCATATGATGCTTCAAACTCTTCAGATTGCTTGTGTTTGTTTGTCTGAAAATCCTGCGCACAGACCTTCCATGCTTCAGGTATTGAAGTTTCTTAAAGGGATCAAAGATGAGTAA 3903 42.86 MGMEFKRFFLVYTLFFELCIWSSNGVLDRNLIAAQRESLISFKASLETSRNLPWNSSVPHCLWVGVSCRLGRVTELSVSSRSLIGQISPSLFNISSLSVLDLSNNFFYGSIPHQISHLQSLTVLSLGQNQFSGEFPIGITELTQLENLKLGTNLFTGKIPPELGNLKLLQTLDLSGNAFAENVPTHIGNLTRILSLDLGNNLLSGSLPLSIFTELKSLTSLDISNNSFSGSIPPEIGNLENLTDLYIGINHFSGELPPEVGNLVMLENFFSPSCSLTGPLPEKLSKLKSLSKLDLSYNPLGCSIPKSIGDLQNLTILDLVYTELNGSIPAELGKCRNLRTLMLSFNFLSGELPHELSELPMLTFSAEKNQLSGPLPSWLGKWDRVESILLSSNRFTGEIPPEIGNCLMLNHLSLSNNLLTGPIPKEICNASSLMEIDLDSNFLSGTIDDTFVVCGNLTQLVLVDNQIDGAIPEYFSDLPLLVINLDSNNFTGSLPRSIWNSVNLMEFSAANNRLEGHLPSEIGYAGSLQRLVLSNNRLTGTIPDEIGNLTALSVLNLNSNLLEGTIPALLGDCIALTTLDLGNNSLNGSIPERLADLAELQCLVLSHNKLSGAIPSKPSAYFQQVTIPDLSFVQHHGVFDVSHNRLTGTIPDELGNCVVVVDLLLNNNLLLGEIPKSLSHLTNLTTLDLSSNMLTGPIPAKICDALKLQGLYLGNNHLTGTIPESLSHLSSLVKLNLTGNKLSGLVPKDLGDLKALTHLDLSSNELDGDLPSSLSSMLNLVGLYVQENMLSGQVVELFPSSMTWKIETLNLSTNYFEGVLPPTLGNLSYLTTLDLHGNKFTGPIPSDLGDLMQLEYFDISNNSLSGEIPEKICSLINMFYLNLAENSLEGPIPRSGICQNISKSSLVGNKDLCGRIMGFNCQIKRLERSAVLNGWSIAGIIITSVLIILTVAFAMRRRILRSYRDNDPEDIEESKLNSFINHNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATNNFCKTNIIGDGGFGTVYKATLPDGKIVAVKKLSEAKTQGHREFIAEMETIGKVKHQNLVSLLGYCSLGEEKLLVYEYMVNGSLDLWLRNRTGALEVLNWETRFKVASGAARGLAFLHHGFIPHIIHRDVKASNILLNEDFEPKVADFGLARLISACETHVTTEIAGTFGYIPPEYGQSGRSTTKGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVFQKVKKGQAADVLDVTVLNADSKHMMLQTLQIACVCLSENPAHRPSMLQVLKFLKGIKDE 1300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7561561 7565903 - Sed0003692.1 Sed07g1049 719913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1049 1300 Pfam Protein tyrosine and serine/threonine kinase 1026 1293 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g1049 1300 SUPERFAMILY Protein kinase-like (PK-like) 1003 1294 IPR011009 -
Sed07g1049 1300 Pfam Leucine Rich Repeat 639 657 IPR001611 GO:0005515(InterPro)
Sed07g1049 1300 Pfam Leucine Rich Repeat 853 875 IPR001611 GO:0005515(InterPro)
Sed07g1049 1300 Pfam Leucine Rich Repeat 337 359 IPR001611 GO:0005515(InterPro)
Sed07g1049 1300 Pfam Leucine Rich Repeat 683 703 IPR001611 GO:0005515(InterPro)
Sed07g1049 1300 Pfam Leucine Rich Repeat 289 311 IPR001611 GO:0005515(InterPro)
Sed07g1049 1300 Pfam Leucine Rich Repeat 806 827 IPR001611 GO:0005515(InterPro)
Sed07g1049 1300 Pfam Leucine Rich Repeat 217 239 IPR001611 GO:0005515(InterPro)
Sed07g1049 1300 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515(InterPro)
Sed07g1049 1300 Pfam Leucine Rich Repeat 576 597 IPR001611 GO:0005515(InterPro)
Sed07g1049 1300 Pfam Leucine Rich Repeat 409 429 IPR001611 GO:0005515(InterPro)
Sed07g1049 1300 Pfam Leucine Rich Repeat 385 406 IPR001611 GO:0005515(InterPro)
Sed07g1049 1300 Pfam Leucine Rich Repeat 830 851 IPR001611 GO:0005515(InterPro)
Sed07g1049 1300 Pfam Leucine Rich Repeat 169 190 IPR001611 GO:0005515(InterPro)
Sed07g1049 1300 Pfam Leucine Rich Repeat 527 549 IPR001611 GO:0005515(InterPro)
Sed07g1049 1300 PANTHER RECEPTOR-LIKE PROTEIN 55 61 178 - -
Sed07g1049 1300 ProSitePatterns Protein kinases ATP-binding region signature. 1028 1051 IPR017441 GO:0005524(InterPro)
Sed07g1049 1300 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1144 1156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g1049 1300 ProSiteProfiles Protein kinase domain profile. 1022 1300 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1049 1300 SMART LRR_sd22_2 287 313 - -
Sed07g1049 1300 SMART LRR_sd22_2 681 707 - -
Sed07g1049 1300 SMART LRR_sd22_2 753 782 - -
Sed07g1049 1300 SMART LRR_sd22_2 166 192 - -
Sed07g1049 1300 SMART LRR_sd22_2 118 150 - -
Sed07g1049 1300 SMART LRR_sd22_2 851 877 - -
Sed07g1049 1300 SMART LRR_sd22_2 215 241 - -
Sed07g1049 1300 SUPERFAMILY L domain-like 55 363 - -
Sed07g1049 1300 SMART serkin_6 1022 1294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1049 1300 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 629 925 - -
Sed07g1049 1300 FunFam leucine-rich repeat receptor protein kinase EMS1 213 362 - -
Sed07g1049 1300 Gene3D Ribonuclease Inhibitor 455 562 IPR032675 -
Sed07g1049 1300 Pfam Leucine rich repeat N-terminal domain 34 68 IPR013210 -
Sed07g1049 1300 SUPERFAMILY L domain-like 630 914 - -
Sed07g1049 1300 Gene3D Ribonuclease Inhibitor 142 213 IPR032675 -
Sed07g1049 1300 Gene3D Ribonuclease Inhibitor 563 616 IPR032675 -
Sed07g1049 1300 SUPERFAMILY L domain-like 367 618 - -
Sed07g1049 1300 Gene3D Transferase(Phosphotransferase) domain 1 1098 1300 - -
Sed07g1049 1300 Gene3D Phosphorylase Kinase; domain 1 985 1097 - -
Sed07g1049 1300 FunFam Leucine-rich repeat receptor-like protein kinase 33 185 - -
Sed07g1049 1300 Pfam Leucine rich repeat 708 766 IPR001611 GO:0005515(InterPro)
Sed07g1049 1300 Pfam Leucine rich repeat 432 490 IPR001611 GO:0005515(InterPro)
Sed07g1049 1300 Gene3D Ribonuclease Inhibitor 621 923 IPR032675 -
Sed07g1049 1300 Gene3D Ribonuclease Inhibitor 214 447 IPR032675 -
Sed07g1049 1300 PRINTS Leucine-rich repeat signature 681 694 - -
Sed07g1049 1300 PRINTS Leucine-rich repeat signature 218 231 - -
Sed07g1049 1300 FunFam serine/threonine-protein kinase BRI1-like 2 983 1097 - -
Sed07g1049 1300 FunFam Uncharacterized protein 363 627 - -
Sed07g1049 1300 Gene3D Ribonuclease Inhibitor 34 141 IPR032675 -
Sed07g1049 1300 SMART LRR_typ_2 142 166 IPR003591 -
Sed07g1049 1300 SMART LRR_typ_2 597 623 IPR003591 -
Sed07g1049 1300 SMART LRR_typ_2 753 777 IPR003591 -
Sed07g1049 1300 SMART LRR_typ_2 729 752 IPR003591 -
Sed07g1049 1300 SMART LRR_typ_2 94 118 IPR003591 -
Sed07g1049 1300 SMART LRR_typ_2 190 214 IPR003591 -
Sed07g1049 1300 SMART LRR_typ_2 287 311 IPR003591 -
Sed07g1049 1300 SMART LRR_typ_2 335 359 IPR003591 -
Sed07g1049 1300 SMART LRR_typ_2 827 851 IPR003591 -
Sed07g1049 1300 SMART LRR_typ_2 681 705 IPR003591 -
Sed07g1049 1300 SMART LRR_typ_2 549 573 IPR003591 -
Sed07g1049 1300 SMART LRR_typ_2 215 239 IPR003591 -
Sed07g1049 1300 FunFam serine/threonine-protein kinase BRI1-like 2 1098 1300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0974 Sed-Chr3:6030370 Sed07g1049 Sed-Chr7:7561561 3.20E-61 dispersed
Sed06g1472 Sed-Chr6:39478834 Sed07g1049 Sed-Chr7:7561561 4.00E-65 dispersed
Sed07g0712 Sed-Chr7:5314831 Sed07g1049 Sed-Chr7:7561561 2.70E-79 dispersed
Sed07g1049 Sed-Chr7:7561561 Sed10g0462 Sed-Chr10:2930498 9.10E-90 dispersed
Sed11g1975 Sed-Chr11:33994818 Sed07g1049 Sed-Chr7:7561561 6.20E-65 dispersed
Sed07g1049 Sed-Chr7:7561561 Sed11g0064 Sed-Chr11:603717 2.90E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79451 PF07714 PK_Tyr_Ser-Thr 3.00E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1049 - - - 0.0