Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1050 ATGTCAAGGGGTATAATAGACCCACTAATTGTTGGAAGAGTGGTGGGAGATGTGGTTGATATTTTCACTCCAAATGTGAAAATGAATGTCATTTACAACTCTTATAAACAAGTTTCTAATGGCCATGAGCTTTTCCCTTCTTTTGTTACCTATAAACCTCGCGTTGAGATTGGTGGTGATGACTTGAGATCAGCTTTCACTTTGATTATGATAGACCCAGATGCTCCAAGCCCAAGTGATTCTCATCTGAAAGAATATCTTCACTGGATGGTCACAGACATTCCTGGTACCACTGATGCTTCTTTTGGGAAAGAGATGATGAGTTACGAGAACCCAAACCCGAACATTGGGATTCATCGTTACGTGTTCGTGTTGTTCAAGCAGAGCGGGAGGCAGACGGTGAGATTGTCGTCGTCTTCGAGAGGGCATTTCAACACGAGAAAATTCTCAGAAGCCAATGGATTGGGGCTTCCAGTGGCCGTAGTTTACTTCAATGCACAAAGAGCAACGGCCGGAAGAAGAAAAATGATTTGA 534 43.07 MSRGIIDPLIVGRVVGDVVDIFTPNVKMNVIYNSYKQVSNGHELFPSFVTYKPRVEIGGDDLRSAFTLIMIDPDAPSPSDSHLKEYLHWMVTDIPGTTDASFGKEMMSYENPNPNIGIHRYVFVLFKQSGRQTVRLSSSSRGHFNTRKFSEANGLGLPVAVVYFNAQRATAGRRKMI 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7588056 7589212 + Sed0012908.1 Sed07g1050 719914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1050 177 ProSitePatterns Phosphatidylethanolamine-binding protein family signature. 66 88 IPR001858 -
Sed07g1050 177 PANTHER PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN 11 170 IPR035810 GO:0009908(PANTHER)|GO:0010228(PANTHER)
Sed07g1050 177 Gene3D - 2 175 IPR036610 -
Sed07g1050 177 CDD PEBP_euk 26 166 IPR035810 -
Sed07g1050 177 SUPERFAMILY PEBP-like 13 168 IPR036610 -
Sed07g1050 177 FunFam Terminal flower 1 1 175 - -
Sed07g1050 177 Pfam Phosphatidylethanolamine-binding protein 53 158 IPR008914 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1050 K06910 - - csv:101218688 283.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0535 Sed-Chr2:42911950 Sed07g1050 Sed-Chr7:7588056 3.20E-59 dispersed
Sed04g1473 Sed-Chr4:29521220 Sed07g1050 Sed-Chr7:7588056 2.90E-60 dispersed
Sed07g1050 Sed-Chr7:7588056 Sed08g1193 Sed-Chr8:24715156 1.30E-52 dispersed
Sed07g1050 Sed-Chr7:7588056 Sed14g0311 Sed-Chr14:3234600 1.00E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g618 . . Bda05g00059 . Bpe03g00295 . Bma10g01214 . Cmo16g00145 . . . . . Sed07g1050 . Cpe14g00117 Bhi01g01345 Tan01g0271 Cmetu06g0928 . Hepe07g0175 Mch10g0171 . . . . . . . . . . . . Lsi05g01247 . . Cme06g00979 Blo07g00420 . . . . . . . . . . Cma16g00139 . Car16g00123 . . . . . . . . . . Cla05g00863 Cam05g0950 Cec05g0955 Cco05g0955 Clacu05g0937 Cmu05g0895 Cre05g0979 . Csa03g01693 Chy06g00927 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000405 2 8 2 3 3 4 5 4 4 4 4 4 5 4 3 4 4 8 5 4 4 5 4 4 3 4 4 5 5 3 125