Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1051 ATGCCTGGAGGAGCAACTGCTGATCCAAGCTTTCTGGCTTTTCCAATTCCTAGTTCAATGCCTAGCTCCTCTGAATTCTCCAGTTCCACTGGGAAAATGGATGGTTATGGAGAAGAGTGTGTGGTTGAAGACAGCTATGATTTGAGTGGAGTTGTGAGGATGAGGGAAGATGAATATGATAGCAGATCAGGCAGTGACAACATTGATGGTGCTGTATCTGGGGATGATCAAGATGCTAATGATTTACAACTATTAAAAAGGAAGAAACACCATAGACATACTCCCCATCAGATCCAAGAGCTTGAGATTTTTTTCAAGGAGTATCCTCATCCAGATGATAAACAAAGGAGTGAGCTAAGTAGGAGGCTTGGTTTGGAGACGAAGCAAGTGAAGTTTTGGTTTCAAAATCGTCGAACACAGATGAAGACACAAATAGAACGCAATGAGAGTGCCATTCTTAAACAAGAAAACGATAAGCTCCGGGGCGAGAATAGTGTGATGAAGGATGCTATTTTGAATTTGAATCCAAACTGCAATACATGTGGTGGACCTTCGATTCCTGTTCATCTATTATTTGAAGAACACCAGCTTAGGATTGAAAATGCCAGATTAAGGGATGAACTGCACCGGTTATATACTGTCACTAGCAAGTTCTTAGGCTGGCCAGTTTTTCCCTTTTCCAATCATGGCTCTTCGCCGAGTTACAACTCGTGCTTGGAACTTTCGGTAGGAAGAAATGGAATCGGAAGTTCAAGTACCATTTCGGATCCTATTTCGATGGGGCTTAACTCGGGCGATGGACTTTGCAGTGCTGACCCTGTGATGCCTATCAGAAAGTCTGAAATGGGCATGCCAGGCAATGATATACCAATTCAGAGAACAATATATGTGGATCTTGCTCTGGCAGCCATGAATGAGCTGCATAGTAATTGGACAACAGAGGCCACCAGAGATAATACAATGGTCATCATCAACAGCTTGGCACTCGTCGAGACGTTGATGGACGCAGACCGATGGGCAGAAATGTTTCCTTGCTTGATTGCTCGAGCTACTACAATCGATGTGATATCAAGCGGCATTGGTGGAACTAGAAATGGTGCATTACAATTGATGCGTGCTGAACTTCGAGTACTTTCCCCGCTCGTTCCTGTTCGTACGCTCAAGTTCCTCCGCTTCTGCAAGCAGCATGCCGATGGTCTATGGGCTGTAGTTGATGTTTCCATCGGAGAAGGTTCGAATTTAAATTCGTTTTTCAGTTGCAGGAGGCTCCCTTCAGGCTGTGTTGTGCAAGATATGCCTAATGGTTTCTCCAAGGTTACCTGGGTGGAACATACAGAATACGATGAGACCGTTATACACCAGCTTTACCGCCCGATAATTAGTTCGGGCATCGGCTTTGGTTCACAACGGTGGCTTGCTACCCTTCAGAGACAATGTGTCTGTCTTGCAATTCTCATGTCAACTATCCCTACCGAAGGTCCCACAGGAATATCACCCCATGGTAAGAGAAATATGCTGAAACTGTCCCAGCGTATGGTGGATAACTTCTGTTCCGGTGTTTGTACTTCGACTTTGCATAAGTGGGACAAGCTTGTTGTTGGCAATATTAGTGAAGATGTAAAAGTGATGGCTCGAAAGAGCATCAACGATCCTGGCGAGCCACCAAGTATCGTGTTGAGTGCTGCAACTTCGATTTGGATGTCAGTAACTCAGCAGAGGTTGTTTGCATTCTTGCAAGACGAGTGCTTAAGGAGTGATTGGGACATTTTATCAAACGGCAGGCCAATGATAGAGATGCTTCACATCTCGAAAGGCCAGGGATCGGATAACCGAGTTTCTCTCTTGTGTGCGAATCCCGTGAATGCTAATGATAGCACCATGTTTATATTGCAAGAGACTTGGACTGATATATCAGGTTCACTGATTGTTTACTCTCCAGTCGATACAGCCTCGGTTAATTTGGTGATTCATGGAGATGATTCTGCTTACATATCGCTACTACCTTCGGGATTCGCCATTCTCCCATATGGTGCATCTAGTAATGGTTGTACAAACAACGACAAAGACGGTTCGATCAAGTCAGACATCAACAGTGGCTATGCTGGTGGATGCCTGCTTACAATTGCCTTCCAAATTTTAGTTAACAGCCTTCCAACAGCCAAACTGACTGTAGAGTCAGTTGAGACGGTTAACAATCTCATTTCTTGCACCATCCAAAAGATCAAAACTGCCCTTCAAGTATCGTAA 2247 44.46 MPGGATADPSFLAFPIPSSMPSSSEFSSSTGKMDGYGEECVVEDSYDLSGVVRMREDEYDSRSGSDNIDGAVSGDDQDANDLQLLKRKKHHRHTPHQIQELEIFFKEYPHPDDKQRSELSRRLGLETKQVKFWFQNRRTQMKTQIERNESAILKQENDKLRGENSVMKDAILNLNPNCNTCGGPSIPVHLLFEEHQLRIENARLRDELHRLYTVTSKFLGWPVFPFSNHGSSPSYNSCLELSVGRNGIGSSSTISDPISMGLNSGDGLCSADPVMPIRKSEMGMPGNDIPIQRTIYVDLALAAMNELHSNWTTEATRDNTMVIINSLALVETLMDADRWAEMFPCLIARATTIDVISSGIGGTRNGALQLMRAELRVLSPLVPVRTLKFLRFCKQHADGLWAVVDVSIGEGSNLNSFFSCRRLPSGCVVQDMPNGFSKVTWVEHTEYDETVIHQLYRPIISSGIGFGSQRWLATLQRQCVCLAILMSTIPTEGPTGISPHGKRNMLKLSQRMVDNFCSGVCTSTLHKWDKLVVGNISEDVKVMARKSINDPGEPPSIVLSAATSIWMSVTQQRLFAFLQDECLRSDWDILSNGRPMIEMLHISKGQGSDNRVSLLCANPVNANDSTMFILQETWTDISGSLIVYSPVDTASVNLVIHGDDSAYISLLPSGFAILPYGASSNGCTNNDKDGSIKSDINSGYAGGCLLTIAFQILVNSLPTAKLTVESVETVNNLISCTIQKIKTALQVS 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7595883 7600644 - Sed0016953.1 Sed07g1051 719915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1051 748 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 309 746 IPR042160 -
Sed07g1051 748 ProSiteProfiles START domain profile. 314 484 IPR002913 GO:0008289(InterPro)
Sed07g1051 748 SUPERFAMILY Bet v1-like 290 480 - -
Sed07g1051 748 SUPERFAMILY Homeodomain-like 73 144 IPR009057 -
Sed07g1051 748 MobiDBLite consensus disorder prediction 16 31 - -
Sed07g1051 748 MobiDBLite consensus disorder prediction 1 34 - -
Sed07g1051 748 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677(InterPro)
Sed07g1051 748 Pfam Homeodomain 87 142 IPR001356 GO:0003677(InterPro)
Sed07g1051 748 CDD START_ArGLABRA2_like 268 479 - -
Sed07g1051 748 CDD homeodomain 87 144 IPR001356 GO:0003677(InterPro)
Sed07g1051 748 FunFam Homeobox-leucine zipper protein HDG1 73 160 - -
Sed07g1051 748 SUPERFAMILY Bet v1-like 509 742 - -
Sed07g1051 748 MobiDBLite consensus disorder prediction 56 77 - -
Sed07g1051 748 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed07g1051 748 SMART START_1 291 481 IPR002913 GO:0008289(InterPro)
Sed07g1051 748 SMART HOX_1 86 148 IPR001356 GO:0003677(InterPro)
Sed07g1051 748 Pfam START domain 312 479 IPR002913 GO:0008289(InterPro)
Sed07g1051 748 Gene3D - 75 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1051 Sed-Chr7:7595883 Sed09g0079 Sed-Chr9:618782 8.60E-226 dispersed
Sed13g0162 Sed-Chr13:1025312 Sed07g1051 Sed-Chr7:7595883 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39047 PF01852 START 8.70E-40 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1051 K09338 - csv:101218216 1221.45