Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1065 ATGGCATCTTCTCGTTTGGTTGGAGGATTAGGACAGTCTTCATCGAGTTCTGGGATTTTCTATCAAGGAGAAGGGCAGTCTTCTGCTATTGTTAATTCTCACTTGAGCCAATCTTTTGCTAATTCATCAAATTCAATTCCAGGAACTGGATGTTCTGATTTTGGTCCTGTTTCCGGAGACATGAATAATGCAGTTTTTAATAGTGTGGCAAATTCAGGGCCAAGCGTGGGTGCAAGTTCATTGGTTACAGATGCAAACTCTGCTCTCTCTGGGGGGCCACATTTGCAAAGGAGTGCAAGCATCAATACAGAGTCATACATGCGCTTGCCTGCTTCGCCTATGTCATTCAACTCGAATAACATTAGTGTGTCGGGCTCCTCTGTTATAGATGGATCCTGCGTAGTGCAGCAAAATTCTCAACAGGACCAAAGTATCCAACACGTTCAGCAACAGGTGCAGCAAGGTGCTTCACATGCCACATCATTACCAACATCACAAATAGGCCAAGGTTCACTGCCTATGGGCTCAAAATTTCAGGGATCTTTCATTCCAGATCCAAGTAATTATTTTCAGGTTCAGAAGAAACCACGACTAGATATAAAGCAGGAAGACGTGCTGCAACAGCAAGTCTTGCAGCAGCTATTTCAGAGACAGGATTCCATGCAGTCACAAAACCGCAACTCTCAGTTACAAGCTTTATATCAACAACAAAGAATGCGGCAACAGCAGCAGATTTTGCAGTCTCTACCCCAGTACAGAGCTCAGTTTCAGCAGCAACAACAGCAACAGATACAGCTGAGACAGCAATTGCAACAACATCAGGCAATGCAGCCAGTATCACCCATGAAGCCCCCATATGATGGTGGTGTTTGTGCTCGTCGGCTGATGCAGTATTTATATCATCAGCGGCAGAGGCCTTCTGAGAATAGTATAGCCTACTGGAGAAAGTTTGTAACAGAGTATTACTCTCCTCGTGCAAAAAAAAGATGGTGCTTGTCAATGTACGAGAATGTTGGTCACCATGCTCTGGGCGTGTTTCCCCAGGCAGCTATGGATGCATGGCATTGCGACATCTGCGGTTCCAAATCAGGAAGGGGCTTTGAGGCTACGTTTGAAGTACTCCCAAGACTAAGCGAGATCAAATTTGGAAGTGGAGTTATTGATGAGCTTTTATTTCTGGACCTTCCTCGAGAAAGGAGATTTCCTTCTGGAATTATGATGTTAGAATATGGAAAAGCAATTCAAGAGAGTGTATATGAGCAACTTCGTGTTGTTCGTGAAGGCCAGCTTCGTATCATATTCACACAAGACTTGAAGATTTTGTCTTGGGAATTCTGTGCACGGAGTCATGAAGAACTCCTTCCACGTAGGTTGGTTGCACCTCAGGTGAATCAGCTTTTACAGGTTGCCCAGAAATGCCAAAGCACAATTGCTGAAAGTGGACCTGATGGTGTCTCTCAGAAGGATTTGCATACAAATAGCAATATGGTGCTGATGGCTGGTCGTCACCTTGCTAAGAGTCTGGAATTGCAGCTGCTGAATGACCTGGGTTTCTCCAAAAGATATGTGAGGTGTTTGCAGATATCAGAGGTGGTCAACAGTATGAAAGATCTGATTGGTTTCTGCCGTGATAAAAAAGTTGGGCCTATTGAGGGGTTGAAAAATTATCCAAGACATGCCACTGCAGCCAAGCTCCAGATGCAAAAAATGCAGGAGATGGAGCAGTTAGCAAGTATACAAGGTCTTCCCTCAGACCACAACACAATTAATAAGCTGATGGCAATTCATCCTGAACTTGATAACCATGGGGTTAACAATAACAACCATCAGATGATTGGCCGAGGAGGTATGAGTGGTTCACAAGCCGCTTTAGCAATGGCTACCTACCAAAATATCCTCATGAGACAAAACTCTATGAATTCCAACCCCAGCCCACACCAACAGGAAGCCGCCTCGTCTTCTTTCAACAACTCCAACTATAATCCATCCCCTACACTCCAGGGGACTGCATCCTTGATGCCTGGATCCATACAGAACTCCTCAGTGGTCGGTGTCGGTGGTGGTGGCTTTTCAAGCGTGCAGCAACCCTTGCAAAAGCAATTGCAGCACAATGCTGGCTCCATGGTCCAACAAAATCATCATCCGCAGATGATTCAAGGTAGCCAGGCCAGTCAACAACAGATGATCCAACAACTAATGCAGATGTCGAGCAACAGTAAGAGTGGCGGTGCACAACAGCAAGCCCTTGCCGGACAAAATGCAAATAGAAGTCTGGGAAGAAGGGGCGGAAATGTGCCTGGGGGGAGCAATGCCCCCGTCCCGAGTCGAAGCAATAGCTTCAAAGCTGCTGCTGCTGCTGCTGCTGCTTCAAATAGCGAGTCCTCTGGGGGTAACTGCGGATTCAATCAAAAGGCTTCTGATTTGGCGCAAGACCTGGTTGAAGAGATAGGGCAAGACTTCCCTGAAAATGGGTTTCTTAACAATGAGATGGATGAGGATTTGGGGTATGATGTCTGGAAGGCATGA 2526 45.92 MASSRLVGGLGQSSSSSGIFYQGEGQSSAIVNSHLSQSFANSSNSIPGTGCSDFGPVSGDMNNAVFNSVANSGPSVGASSLVTDANSALSGGPHLQRSASINTESYMRLPASPMSFNSNNISVSGSSVIDGSCVVQQNSQQDQSIQHVQQQVQQGASHATSLPTSQIGQGSLPMGSKFQGSFIPDPSNYFQVQKKPRLDIKQEDVLQQQVLQQLFQRQDSMQSQNRNSQLQALYQQQRMRQQQQILQSLPQYRAQFQQQQQQQIQLRQQLQQHQAMQPVSPMKPPYDGGVCARRLMQYLYHQRQRPSENSIAYWRKFVTEYYSPRAKKRWCLSMYENVGHHALGVFPQAAMDAWHCDICGSKSGRGFEATFEVLPRLSEIKFGSGVIDELLFLDLPRERRFPSGIMMLEYGKAIQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARSHEELLPRRLVAPQVNQLLQVAQKCQSTIAESGPDGVSQKDLHTNSNMVLMAGRHLAKSLELQLLNDLGFSKRYVRCLQISEVVNSMKDLIGFCRDKKVGPIEGLKNYPRHATAAKLQMQKMQEMEQLASIQGLPSDHNTINKLMAIHPELDNHGVNNNNHQMIGRGGMSGSQAALAMATYQNILMRQNSMNSNPSPHQQEAASSSFNNSNYNPSPTLQGTASLMPGSIQNSSVVGVGGGGFSSVQQPLQKQLQHNAGSMVQQNHHPQMIQGSQASQQQMIQQLMQMSSNSKSGGAQQQALAGQNANRSLGRRGGNVPGGSNAPVPSRSNSFKAAAAAAAASNSESSGGNCGFNQKASDLAQDLVEEIGQDFPENGFLNNEMDEDLGYDVWKA 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7636741 7644046 + Sed0020201.4 Sed07g1065 719929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1065 841 MobiDBLite consensus disorder prediction 695 759 - -
Sed07g1065 841 Coils Coil 256 276 - -
Sed07g1065 841 MobiDBLite consensus disorder prediction 145 180 - -
Sed07g1065 841 Pfam LIM-domain binding protein 294 554 IPR029005 -
Sed07g1065 841 MobiDBLite consensus disorder prediction 637 673 - -
Sed07g1065 841 MobiDBLite consensus disorder prediction 695 777 - -
Sed07g1065 841 PANTHER LIM DOMAIN-BINDING PROTEIN 15 829 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1063 Sed-Chr7:7636741 Sed07g1065 Sed-Chr7:7636741 0.00E+00 dispersed
Sed07g1065 Sed-Chr7:7636741 Sed13g0163 Sed-Chr13:1039241 0.00E+00 dispersed
Sed07g1064 Sed-Chr7:7636741 Sed07g1065 Sed-Chr7:7636741 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1065 - - - 0.0