Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1072 ATGCCTTTTCCGTTTTTAATTCCTCCATGTCCCAACGCCGTCCTACTTCCACTCCCCCCGCCCGCCCCCCACCCCCGCTTCCGTGGCGTCCGCAGCCGCAGCGGCAAATGGGTCTCCGAAATCCGCGAGCCCCGCAAGAGCACCCGCATTTGGCTCGGCACCTACCCCACCCCCGACATGGCTGCCGCCGCCTACGATGTCGCTGCCCTCGCCCTCAAAGGCCCCCATGCTTCTCTCAACTTCCCCGACTCTCTTCTTTCCTATCACATTCCTTCCTCCACTTCCGCCTCTGATATTCGCGCTGCCGCTGCCGTCGCTGCCGCTTCCCGATGCCCTCCACCCGACCATCCTGATCCTACGCCTGCAATTCCGATGGACCCACTCGCTGCCACGGACCAGGCCAGTTCCTCCGGGGGTGCCTACATGGATGTTGATGACTTGCTTAACATGCCCAATTTACTGCTGGACATGGCTGGGGGCTTGCTCCTCAGCCCCCCACGCATCAAGTCGCCCTCCAATTCCGATGACTCTCCTTCCAACTCCGACCATGGATTATGGAGTAGTTACTCCTAA 573 60.91 MPFPFLIPPCPNAVLLPLPPPAPHPRFRGVRSRSGKWVSEIREPRKSTRIWLGTYPTPDMAAAAYDVAALALKGPHASLNFPDSLLSYHIPSSTSASDIRAAAAVAAASRCPPPDHPDPTPAIPMDPLAATDQASSSGGAYMDVDDLLNMPNLLLDMAGGLLLSPPRIKSPSNSDDSPSNSDHGLWSSYS 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7742435 7744125 + Sed0010343.1 Sed07g1072 719936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1072 190 FunFam Ethylene-responsive transcription factor 2 26 83 - -
Sed07g1072 190 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677(InterPro)
Sed07g1072 190 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1072 190 PRINTS Ethylene responsive element binding protein signature 64 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1072 190 SMART rav1_2 26 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1072 190 MobiDBLite consensus disorder prediction 107 136 - -
Sed07g1072 190 MobiDBLite consensus disorder prediction 167 190 - -
Sed07g1072 190 Gene3D AP2/ERF domain 26 83 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1072 190 CDD AP2 26 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1072 190 MobiDBLite consensus disorder prediction 165 190 - -
Sed07g1072 190 Pfam AP2 domain 25 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1072 190 ProSiteProfiles AP2/ERF domain profile. 26 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1072 190 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 24 187 IPR045277 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1457 Sed-Chr4:29207524 Sed07g1072 Sed-Chr7:7742435 3.20E-25 dispersed
Sed07g1072 Sed-Chr7:7742435 Sed08g2857 Sed-Chr8:39791832 1.50E-33 dispersed
Sed07g1072 Sed-Chr7:7742435 Sed07g1073 Sed-Chr7:7770187 4.00E-26 tandem
Sed01g3918 Sed-Chr1:68377726 Sed07g1072 Sed-Chr7:7742435 3.30E-39 wgd
Sed13g0173 Sed-Chr13:1119894 Sed07g1072 Sed-Chr7:7742435 2.90E-25 wgd
Sed05g0834 Sed-Chr5:6581566 Sed07g1072 Sed-Chr7:7742435 5.40E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39049 PF00847 AP2 5.90E-11 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1072 - - - 0.0