Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1073 ATGGATACTTTTTCAATTTTATGCGAAGAGATGTCGAGCAGCAATTGCCGGCGCGCCATTTATTCCGGCGAGGAGGTGATGCTGGCGGCGAGGAATCCGAAGAAGAGGGCCGGAAGGAAGAAGTTTAAAGAAACGAGGCATCCGATTTACAGAGGAGTGAGGCAGAGGAATTCCGGCAAGTGGGTCTGTGAAGTTCGAGAGCCTAATAAGAAGTCCAGGATTTGGCTTGGGACTTTTCCGACGCCGGAGATGGCGGCTCGGGCTCACGACGTGGCGGCGCTGGCCCTGAGGGGTCGCTCTGCTTGCCTCAATTTTGCCGATTCTGCGTGGCGGCTGCCGGTGCCGGCGTCTGGCGATGCCAGAGATATTCAGGCGGCGGCGGCGGCGGCGGCGGAGGCATTTCCGATGGCGGAGAATTTAATGGCGGCGGCGGCGATGATGCCGGAAAACGGGGTTTACGTGGATGAGGTGGCGGATTTTGGATTGTTGGAAGAGATGGCGTCGGGGATGATGTTGCCTCCACCTCAGCATATTCATGATGACATGGAATTTTGTAGTGACGTGTCATTGTGGAGCTATTAG 582 56.19 MDTFSILCEEMSSSNCRRAIYSGEEVMLAARNPKKRAGRKKFKETRHPIYRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTPEMAARAHDVAALALRGRSACLNFADSAWRLPVPASGDARDIQAAAAAAAEAFPMAENLMAAAAMMPENGVYVDEVADFGLLEEMASGMMLPPPQHIHDDMEFCSDVSLWSY 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7770187 7771305 + Sed0016776.1 Sed07g1073 719937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1073 193 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1073 193 SUPERFAMILY DNA-binding domain 49 108 IPR016177 GO:0003677(InterPro)
Sed07g1073 193 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1073 193 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 193 IPR045277 GO:0003700(InterPro)
Sed07g1073 193 SMART rav1_2 49 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1073 193 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Sed07g1073 193 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1073 193 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1073 193 Pfam AP2 domain 49 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1073 193 CDD AP2 48 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1073 Sed-Chr7:7770187 Sed13g0173 Sed-Chr13:1119894 1.70E-77 dispersed
Sed07g1072 Sed-Chr7:7742435 Sed07g1073 Sed-Chr7:7770187 4.00E-26 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39050 PF00847 AP2 2.40E-15 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1073 - - - 0.0