Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g1073 | ATGGATACTTTTTCAATTTTATGCGAAGAGATGTCGAGCAGCAATTGCCGGCGCGCCATTTATTCCGGCGAGGAGGTGATGCTGGCGGCGAGGAATCCGAAGAAGAGGGCCGGAAGGAAGAAGTTTAAAGAAACGAGGCATCCGATTTACAGAGGAGTGAGGCAGAGGAATTCCGGCAAGTGGGTCTGTGAAGTTCGAGAGCCTAATAAGAAGTCCAGGATTTGGCTTGGGACTTTTCCGACGCCGGAGATGGCGGCTCGGGCTCACGACGTGGCGGCGCTGGCCCTGAGGGGTCGCTCTGCTTGCCTCAATTTTGCCGATTCTGCGTGGCGGCTGCCGGTGCCGGCGTCTGGCGATGCCAGAGATATTCAGGCGGCGGCGGCGGCGGCGGCGGAGGCATTTCCGATGGCGGAGAATTTAATGGCGGCGGCGGCGATGATGCCGGAAAACGGGGTTTACGTGGATGAGGTGGCGGATTTTGGATTGTTGGAAGAGATGGCGTCGGGGATGATGTTGCCTCCACCTCAGCATATTCATGATGACATGGAATTTTGTAGTGACGTGTCATTGTGGAGCTATTAG | 582 | 56.19 | MDTFSILCEEMSSSNCRRAIYSGEEVMLAARNPKKRAGRKKFKETRHPIYRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTPEMAARAHDVAALALRGRSACLNFADSAWRLPVPASGDARDIQAAAAAAAEAFPMAENLMAAAAMMPENGVYVDEVADFGLLEEMASGMMLPPPQHIHDDMEFCSDVSLWSY | 193 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 7770187 | 7771305 | + | Sed0016776.1 | Sed07g1073 | 719937 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g1073 | 193 | Gene3D | AP2/ERF domain | 49 | 107 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g1073 | 193 | SUPERFAMILY | DNA-binding domain | 49 | 108 | IPR016177 | GO:0003677(InterPro) | |
Sed07g1073 | 193 | ProSiteProfiles | AP2/ERF domain profile. | 49 | 106 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g1073 | 193 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 12 | 193 | IPR045277 | GO:0003700(InterPro) | |
Sed07g1073 | 193 | SMART | rav1_2 | 49 | 112 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g1073 | 193 | FunFam | Ethylene-responsive transcription factor 2 | 48 | 107 | - | - | |
Sed07g1073 | 193 | PRINTS | Ethylene responsive element binding protein signature | 72 | 88 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g1073 | 193 | PRINTS | Ethylene responsive element binding protein signature | 50 | 61 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g1073 | 193 | Pfam | AP2 domain | 49 | 98 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g1073 | 193 | CDD | AP2 | 48 | 108 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g1073 | Sed-Chr7:7770187 | Sed13g0173 | Sed-Chr13:1119894 | 1.70E-77 | dispersed | |
Sed07g1072 | Sed-Chr7:7742435 | Sed07g1073 | Sed-Chr7:7770187 | 4.00E-26 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39050 | PF00847 | AP2 | 2.40E-15 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g1073 | - | - | - | 0.0 |