Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1086 ATGGAGATATTCCGTAGAACACTAAGTGGATATGAAGAAAGTTTGCGAGCGAAATGTAAAGAGTGGCGACGGCATAGAATAGAGATGAGACGATTGGCGGCATTGACACTGGATCCTTCGGCCAAGCAACACCAAAAAGAGACTCAAACCAAGAGTAGCTGTGAGAAGAAGCGTGTCCGGCAGGAGGCTGGGGGTGCTGTCATGGAGATTTCGCCGTTCGGGGTCATGTCGGTTTCCGGGAGGTCACGTGAGATGGAGGATGCAGTGGCGATAAGCACGTGCCTCATTGGCCAAGAAACCTACCGCCGGCCACCGGTGCATCTCTTCGCCGTCTACGACGGACATGGAGGCCATCACGTGTCAGCCCTCTGTAGGGAGAAGATGCATTTGTTTATTCAGGAGGAATGGGCGCGCGTGGCGGCCACGCTCAAGGAACCGGAGAGTGGCGCGACGGCGGCGGAGAAGGAGGAGGCGACGTGGGGAAGGGTGATGCGGCGCAGTTTTGAGAGGATTGACGAACTGGCTCTCAACACTTGTGCCTGTGGGAGTCTCGGAGGCCGGTGTGGTTGCCAACCCATGGCGGTGGCGCTCGGCGGCTCCACCGCCGTCGTCGCCGTGCTCACTCCTTACAACATCATCGTCGCCAACTGTGGCGACTCACGCGCCGTCCTGTGCCGAGGCGGAAGGGCCATTCCGCTTTCCGTTGATCAAAAGCCTGATAGGATTGATGAACTAGAAAGGATCAAAGCCGCGGGAGGACGGGTGATTTCCATAAATGGAGCTCGGGTTGAAGGCATCCTTGCAATGTCCCGTGCGATCGGCGACAAATTTCTCAAGCCAGTTGTAATATCAGAACCAGAAATTACTTTCACCAGAAGAGAATCAGATGATGAATGTTTAATACTTGCCAGTGATGGTTTGTGGGATGTTCTTTCAAGTGAGTTGGCTTGTACTCTAGCTCTGGAATGTCTTGGAGGAGGATCGGGTGCTGGTTCTTCGTCTACATCAGACCTCAACGTCTTGCCTCAAATTGAAGAAGGGACTGGAATTATATATCCCTCTCAAAGTGCACTAGCTGCAGGACTGCTTACTCGACTTGCTTTGGCGCGTAAAAGCACTGACAATATCAGTGTCATAGTGATTGATCTAATGAGGAACGTAGCCAACAAATGA 1173 53.03 MEIFRRTLSGYEESLRAKCKEWRRHRIEMRRLAALTLDPSAKQHQKETQTKSSCEKKRVRQEAGGAVMEISPFGVMSVSGRSREMEDAVAISTCLIGQETYRRPPVHLFAVYDGHGGHHVSALCREKMHLFIQEEWARVAATLKEPESGATAAEKEEATWGRVMRRSFERIDELALNTCACGSLGGRCGCQPMAVALGGSTAVVAVLTPYNIIVANCGDSRAVLCRGGRAIPLSVDQKPDRIDELERIKAAGGRVISINGARVEGILAMSRAIGDKFLKPVVISEPEITFTRRESDDECLILASDGLWDVLSSELACTLALECLGGGSGAGSSSTSDLNVLPQIEEGTGIIYPSQSALAAGLLTRLALARKSTDNISVIVIDLMRNVANK 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7969539 7972217 - Sed0019338.1 Sed07g1086 719950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1086 390 SUPERFAMILY PP2C-like 72 383 IPR036457 -
Sed07g1086 390 PANTHER PROTEIN PHOSPHATASE 52 382 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed07g1086 390 Gene3D - 65 389 IPR036457 -
Sed07g1086 390 ProSiteProfiles PPM-type phosphatase domain profile. 72 383 IPR001932 -
Sed07g1086 390 Pfam Protein phosphatase 2C 73 355 IPR001932 -
Sed07g1086 390 CDD PP2Cc 73 383 IPR001932 -
Sed07g1086 390 ProSitePatterns PPM-type phosphatase domain signature. 108 116 IPR000222 GO:0043169(InterPro)
Sed07g1086 390 SMART PP2C_4 59 381 IPR001932 -
Sed07g1086 390 MobiDBLite consensus disorder prediction 38 57 - -
Sed07g1086 390 FunFam Protein phosphatase 2C 50 94 390 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1086 Sed-Chr7:7969539 Sed08g1784 Sed-Chr8:32608837 2.00E-61 dispersed
Sed13g0206 Sed-Chr13:1347815 Sed07g1086 Sed-Chr7:7969539 2.10E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1086 K14497 - csv:101206634 492.271