Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1100 ATGGAGGAGAAAGAAATCGGAGTTTCTAGGTTTACGATTACTAACAGTGAAGCCCTAGAGAGCTTCCAGTCAGCTCCAAGAGCCGAAACCCTAAAACCAACCGAGGAACATCAAGGAACAGAGCTCGCGGCTGCTACACCACCGGGATTCGCGACGGCGGCTGAGAAACCTCCGGCGAGCGCGGCGGTTTCCAGTACGGAAACGAAGAAGAAGAGAGGGAGACCGAGAAAGTACGGGCCGGACGGGAAGCGGTCGCTGACGCTGGCGCTATCTCCGATGCCGATTTCGTCGTCAATTCCGCTCACCGGAGGGCTTCCGAACTGGAAACGAGATAACGAGATGTCTCAAGCGATAGTTACGAAGCCGCAGAGATTCGAGTTCGAGAATCCTGGTCAGAGACTTGCATACACTGTTGGTGCAAATTTTACTCCCCATGTGATCACTGTCAATGCTGGCGAGGACATTACGATGAAGGTTATGTCTTTCTCTCAGCAAGAATCCCGAGCTATTTGCATTCTTTCTGCCAATGGCACAATTTCAAATGTTACACTTCGACAAGCAACTTCTTTTGGAGGTACCTTAACTTATGAGGGTTGTTTTGAAATACTCGCATTGACCGGATCGTATATGCCCACACAGAATGGTGCCGCAAAGAGCAGATGTGGTGGAATGAGTGTCTCGCTAGCAGGTCAAGATGGACGAGTCGTTGGCGGTGGACTTGCCGGGTTGTTGGTAGCTGCTGGTCCTGTGCAAGTTGTGGTCGGTAGTTTCCTTACGGGTCACCAGCAAGAACAGAAGCCAAAGAAGCCTAGAAATGAGTCCACAACCATTTTCTTTCCTCCCATCAACACCAACACTGGTAAAGAAATGAAGGCAATGTACACCGGCGGTATCGAGCCTAGTCTCACGTCGCCGTCCTATCAAGAACACAATCCACCGTCGCCAAGCCCAGTGACAGGCTTCAAAATCTCATCCACTGATAACTTACCTCCATCTGAACAGGAACCCAAACCACAAAGTCAATCAAACTGTGAGGTTTCTTGTTGA 1047 50.14 MEEKEIGVSRFTITNSEALESFQSAPRAETLKPTEEHQGTELAAATPPGFATAAEKPPASAAVSSTETKKKRGRPRKYGPDGKRSLTLALSPMPISSSIPLTGGLPNWKRDNEMSQAIVTKPQRFEFENPGQRLAYTVGANFTPHVITVNAGEDITMKVMSFSQQESRAICILSANGTISNVTLRQATSFGGTLTYEGCFEILALTGSYMPTQNGAAKSRCGGMSVSLAGQDGRVVGGGLAGLLVAAGPVQVVVGSFLTGHQQEQKPKKPRNESTTIFFPPINTNTGKEMKAMYTGGIEPSLTSPSYQEHNPPSPSPVTGFKISSTDNLPPSEQEPKPQSQSNCEVSC 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8068997 8075490 + Sed0017302.1 Sed07g1100 719964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1100 348 ProSiteProfiles PPC domain profile profile. 139 283 IPR005175 -
Sed07g1100 348 MobiDBLite consensus disorder prediction 1 85 - -
Sed07g1100 348 MobiDBLite consensus disorder prediction 9 23 - -
Sed07g1100 348 SUPERFAMILY AF0104/ALDC/Ptd012-like 141 263 - -
Sed07g1100 348 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 40 312 IPR039605 GO:0003680(InterPro)
Sed07g1100 348 MobiDBLite consensus disorder prediction 260 284 - -
Sed07g1100 348 Gene3D - 144 273 - -
Sed07g1100 348 MobiDBLite consensus disorder prediction 299 348 - -
Sed07g1100 348 FunFam AT-hook motif nuclear-localized protein 1-like 144 275 - -
Sed07g1100 348 MobiDBLite consensus disorder prediction 296 348 - -
Sed07g1100 348 Pfam Plants and Prokaryotes Conserved (PCC) domain 144 257 IPR005175 -
Sed07g1100 348 CDD DUF296 143 257 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0580 Sed-Chr5:4236847 Sed07g1100 Sed-Chr7:8068997 2.20E-64 dispersed
Sed05g0581 Sed-Chr5:4236847 Sed07g1100 Sed-Chr7:8068997 2.20E-64 dispersed
Sed07g1100 Sed-Chr7:8068997 Sed12g0242 Sed-Chr12:1406829 3.20E-58 dispersed
Sed07g1100 Sed-Chr7:8068997 Sed07g1101 Sed-Chr7:8068997 1.30E-136 tandem
Sed01g3955 Sed-Chr1:68666267 Sed07g1100 Sed-Chr7:8068997 5.00E-19 wgd
Sed13g0195 Sed-Chr13:1277102 Sed07g1100 Sed-Chr7:8068997 1.40E-151 wgd
Sed05g0863 Sed-Chr5:6958647 Sed07g1100 Sed-Chr7:8068997 4.90E-69 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1100 - - - 0.0