Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1101 ATGGAGGAGAAAGAAATCGGAGTTTCTAGGTTTACGATTACTAACAGTGAAGCCCTAGAGAGCTTCCAGTCAGCTCCAAGAGCCGAAACCCTAAAACCAACCGAGGAACATCAAGGAACAGAGCTCGCGGCTGCTACACCACCGGGATTCGCGACGGCGGCTGAGAAACCTCCGGCGAGCGCGGCGGTTTCCAGTACGGAAACGAAGAAGAAGAGAGGGAGACCGAGAAAGTACGGGCCGGACGGGAAGCGGTCGCTGACGCTGGCGCTATCTCCGATGCCGATTTCGTCGTCAATTCCGCTCACCGGAGGGCTTCCGAACTGGAAACGAGATAACGAGATGTCTCAAGCGATAGTTACGAAGCCGCAGAGATTCGAGTTCGAGAATCCTGGTCAGAGACTTGCATACACTGTTGGTGCAAATTTTACTCCCCATGTGATCACTGTCAATGCTGGCGAGGACATTACGATGAAGGTTATGTCTTTCTCTCAGCAAGAATCCCGAGCTATTTGCATTCTTTCTGCCAATGGCACAATTTCAAATGTTACACTTCGACAAGCAACTTCTTTTGGAGGTACCTTAACTTATGAGGGTTGTTTTGAAATACTCGCATTGACCGGATCGTATATGCCCACACAGAATGGTGCCGCAAAGAGCAGATGTGGTGGAATGAGTGTCTCGCTAGCAGGTCAAGATGGACGAGTCGTTGGCGGTGGACTTGCCGGGTTGTTGGTAGCTGCTGGTCCTGTGCAAGTAGGATAA 762 51.05 MEEKEIGVSRFTITNSEALESFQSAPRAETLKPTEEHQGTELAAATPPGFATAAEKPPASAAVSSTETKKKRGRPRKYGPDGKRSLTLALSPMPISSSIPLTGGLPNWKRDNEMSQAIVTKPQRFEFENPGQRLAYTVGANFTPHVITVNAGEDITMKVMSFSQQESRAICILSANGTISNVTLRQATSFGGTLTYEGCFEILALTGSYMPTQNGAAKSRCGGMSVSLAGQDGRVVGGGLAGLLVAAGPVQVG 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8068997 8074346 + Sed0017302.2 Sed07g1101 719965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1101 253 ProSiteProfiles PPC domain profile profile. 139 253 IPR005175 -
Sed07g1101 253 MobiDBLite consensus disorder prediction 1 85 - -
Sed07g1101 253 MobiDBLite consensus disorder prediction 9 23 - -
Sed07g1101 253 Pfam Plants and Prokaryotes Conserved (PCC) domain 144 252 IPR005175 -
Sed07g1101 253 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 40 252 IPR039605 GO:0003680(InterPro)
Sed07g1101 253 SUPERFAMILY AF0104/ALDC/Ptd012-like 141 252 - -
Sed07g1101 253 Gene3D - 144 253 - -
Sed07g1101 253 CDD DUF296 143 252 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1101 Sed-Chr7:8068997 Sed13g0195 Sed-Chr13:1277102 6.50E-109 dispersed
Sed07g1100 Sed-Chr7:8068997 Sed07g1101 Sed-Chr7:8068997 1.30E-136 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1101 - - - 0.0