Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1105 ATGAGAGTTTCATGTTGGATTCGTAAGATTAGGGGTGTTCAGGTTCAATGTTTGCATTCCAATTTGGGAAAACAAACGCTTTCTCGATTTCCCACTCCCCATTTTTTCAATGTCATTAATTCTATATCGCTTTTGAGTTCGCGGGTAGTCTGTAGAAGATTCTATTCAATTTCTTTTGTTGTGCGTCGAACAATTTGGAATCGAAGTTTTTGTAGTGATGATCGATTTAACTATAAGAAGGGGCTGGAGAGATCAGAGTTTGGTCACTTTAAGCATGGAAATTCAGATTCTTCTGAGTTTGGGAGTCTCAGATGTGATGATTTGTCAGCGAGAAGGGTTTTTCTAGAGAATTCGAAAATTGATGCCGAAAAAGTTCTGGAGATTCTCAAACAGGATAGCCCTGGATTTGATACATTATTGGCTTTGGATGAACTGCAATTAAAGGTCTCATGGATTCTTGTTAGGGAAGTTCTGATGGGGATTTGGAGAAGTATAAATGTTCTTAACAAAACCCAGTGTGCAAAATTGGGGTACGAGTTCTTTGTCTGGTCAGGTAAGGCTGCGAATTACAAACACACGGTGAGTTTGTATCATATGATCATGAAGATACTTGCTGAATGTAAGGAGTTGAAGGCTATGTGGAGGCTACTTGATGAGATGTATGAGAAAGGGTACCCTGGCACTGCGAGGACATTTACATTATTGATAAGTACTTGTGGTGATGCAGGCTTGGCTAGGAAAGTTGTCGAGAGATTTATCAAATCGAAAACGTTCAATTACAGGCCGCTTAAGCACTCGTATAACGCCATTCTCCATGCTCTTCTTGTTGCAAAGCAGTACAAGTTGATTGAAGGGGTGTATCAGCAAATGTTGCTTGATGGTCATAGCTCAGACATGCTGGCATACAATGCGCTATTGTTTGCAAGGTGCAAATTGGGGAAATTGGATCAGTTTCACAGATTGCTTGATGAAATGGCCAGGAATGGGTTCTCTCCTGATAATCATACTTATAACATTCTTCTTTATGTTCTTGGCAAAGGAGACAACCGTCTTGCAGCTCAAAATCTTTTGAAACACATGAAGGAAGTGGGTAATGATCCGAGCGTTCTCCACTTCACGACGCTGATAAATGGATTTAGTCGGGCGGGAAATTTGGATGCTTGCAAATATTTTTTTGATGAACTGGCAAATTCTGGCTGCACTCCTGATATTGTTTGCTACAATGTGATGATCACAAGCTATACAGTGGCTGGGGAGCATGAAAAAGCTCGAGAACTTTTCGACGAGATGATAATAAAGGGCCAGCTCCCTAGTGTTTTTACATACAACTCTATGATTCATGGTTTTTGTATGGTAGGTAAATTCGAGGAGGCTTACTCTATGCTTGTAGAAATGGAATCGCGAGGTTGTAGATCAAATTTTCGTGTATATAGTACCCTTGTAAATTATTTGCGATATGCTGGAAAACATTCTGAGGCTGACAAAGTTATAACACATGTGGTCAAGAAGGGGCAATACACCCATTTAGTGGCAAAATTGAAGGGATAG 1548 40.25 MRVSCWIRKIRGVQVQCLHSNLGKQTLSRFPTPHFFNVINSISLLSSRVVCRRFYSISFVVRRTIWNRSFCSDDRFNYKKGLERSEFGHFKHGNSDSSEFGSLRCDDLSARRVFLENSKIDAEKVLEILKQDSPGFDTLLALDELQLKVSWILVREVLMGIWRSINVLNKTQCAKLGYEFFVWSGKAANYKHTVSLYHMIMKILAECKELKAMWRLLDEMYEKGYPGTARTFTLLISTCGDAGLARKVVERFIKSKTFNYRPLKHSYNAILHALLVAKQYKLIEGVYQQMLLDGHSSDMLAYNALLFARCKLGKLDQFHRLLDEMARNGFSPDNHTYNILLYVLGKGDNRLAAQNLLKHMKEVGNDPSVLHFTTLINGFSRAGNLDACKYFFDELANSGCTPDIVCYNVMITSYTVAGEHEKARELFDEMIIKGQLPSVFTYNSMIHGFCMVGKFEEAYSMLVEMESRGCRSNFRVYSTLVNYLRYAGKHSEADKVITHVVKKGQYTHLVAKLKG 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8111369 8113747 + Sed0008807.1 Sed07g1105 719969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1105 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Sed07g1105 515 Pfam PPR repeat family 299 344 IPR002885 -
Sed07g1105 515 Pfam PPR repeat family 402 450 IPR002885 -
Sed07g1105 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Sed07g1105 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Sed07g1105 515 SUPERFAMILY HCP-like 268 463 - -
Sed07g1105 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Sed07g1105 515 NCBIfam pentatricopeptide repeat 301 333 IPR002885 -
Sed07g1105 515 NCBIfam pentatricopeptide repeat 372 404 IPR002885 -
Sed07g1105 515 NCBIfam pentatricopeptide repeat 440 473 IPR002885 -
Sed07g1105 515 NCBIfam pentatricopeptide repeat 405 438 IPR002885 -
Sed07g1105 515 Gene3D Tetratricopeptide repeat domain 292 365 IPR011990 GO:0005515(InterPro)
Sed07g1105 515 Gene3D Tetratricopeptide repeat domain 137 291 IPR011990 GO:0005515(InterPro)
Sed07g1105 515 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 123 506 - GO:0009507(PANTHER)|GO:0010019(PANTHER)|GO:0031930(PANTHER)
Sed07g1105 515 Gene3D Tetratricopeptide repeat domain 382 513 IPR011990 GO:0005515(InterPro)
Sed07g1105 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Sed07g1105 515 Pfam PPR repeat 372 400 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1105 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1105 Sed-Chr7:8111369 Sed13g0123 Sed-Chr13:808328 2.90E-103 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g666 . . Bda05g00073 . Bpe03g00288 . Bma10g01222 . Cmo16g00134 Cmo18g01269 . . . . Sed07g1105 . Cpe14g00109 Bhi01g01321 Tan01g0253 Cmetu06g1773 . Hepe07g0160 Mch10g0155 . . . . . . . . . . Cone14ag0088 Cone15ag0092 Lsi05g01227 . . . Blo07g00412 . . . . . . . . . . . Cma18g01246 Car16g00114 Car18g01152 Cpe09g00092 . . . . . . . . Cla05g00880 Cam05g0968 Cec05g0972 Cco05g0972 . Cmu05g0912 Cre05g0996 . Csa03g01710 Chy06g00946 .