Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1117 ATGGCTCCACAAAACAAAATTTCATTTTTTTTCATAACCCTTTTGGCAATTCTTTCAAATGCATCTTCACAAACAAAATCCAAAACAGGCAACGACATTGTCAAATGGTGCAAAACGACGCCGCATCCAAGAGTTTGCATTTTCTTCATGTCACCGGTTAAACCCCCACCCAAAAACCGGCCGGAGTTTCGAAAACTAGCGATAAAAACCGCCATGGAGAAAACCGCCGAGGCTCAACACTACGCGGCCCGGTTCGGTTCGAGCTGCAAAACCACGCGCCAGAGAGCCGCGTGGGCCGACTGCTTGAACCTCTACAACGACGCCGTTTTGCAACTTAACCGCACCCTCCAATGCCTCGCCGGCGCCACCCTCCGCCGCCGCCGGTGTACGGATTTCGACGCACAAACGTGGCTGAGCTCCGCCCTGACGAGCATCGATACGTGCATCTCCGGCGCGGCGGATCTTAACGTGACGGATTTTATAACGCCGATCAAATGCCAGAACGTTTCGAAGATGATTAGCAATTGCTTGGCGATTAATGGGGGGTTTTTGGAAGAAGGGGTTAAGAGTGGGAAAATGGGAATGGAAAATCGAAATGGGTTTCCGATTTGGGTTTCGAGGGGTGATCGGAAATTGCTGTTGCAGTCGGCGGCGAAGTTGCGGGCTAATTTGGTGGTGGCGAAAGATGGATCGGGGAATTTCCGGTCGGTTCAGGCGGCTATCAACGCCGCCGCGAGACGGCGGAGGAAGGGGCGATTTGTAATTTATGTAAAGCGAGGGGTTTATAGAGAGAATATTGAAGTTGGGACTGATAATGTGAATTTGATGCTCGTCGGAGATGGAATGAGATTTACTGTGATTTCCGGTGGAAGAAGCGTCGCCGCCGGCTTCACCACCTTCAGTTCTGCAACCGCCGGTATCCAAGGATTAGCATTCATAGCACGAGGCATAGCGTTCGTGAACACGGCTGGCCCTCGAATGGGCCAAGCCGTGGCGCTCCGATCATCGTCGGACCTATCCGTGTTCCACAGGTGCAGCTTCCAAGGCTACCAAGACACACTAATGGTGCTTTCACAGAGACAATTCTACAAGCAATGTTATATCTACGGTACAATCGACTTCATTTTCGGCAACGCCGCAGTGGTTTTACAAAATTGTTTGATTTACGTACGAAGGCCCTTAAAGGGCCAAGTCAACGTCATCACGGCCCAAGGCCGAGAGGACCCATTTCAAAACAGCGGAATCTCAATCCACAACTCCCAAATACGGGCCGCTCCGGATTTGAGGCCCATTATTGGCTCTGTGAAAACGTATTTGGGCCGGCCCTGGAAGAAGTATTCGCGGGCCGTGATAATGCGGAGCTATATCGACACTTTGGTGAGCCCAATGGGCTGGCTGGCGTGGCAAAGTAGTAAATTTGCTCAAGATACGTTGTATTATGGGGAGTATAGGAATTTTGGGCCTAGGGCTTCGACCCGACATAGGGTCCGGTGGCCTGGTTTTCATGTTATTAAAAGCCCAAATGTGGCCTCTAAGTTTACCGTTGGGAGACTCATCGCCGGCCAGACTTGGCTGCCGGCCACCGGAGTTCCGTTCAAGCTTGGCCTTTGA 1611 51.52 MAPQNKISFFFITLLAILSNASSQTKSKTGNDIVKWCKTTPHPRVCIFFMSPVKPPPKNRPEFRKLAIKTAMEKTAEAQHYAARFGSSCKTTRQRAAWADCLNLYNDAVLQLNRTLQCLAGATLRRRRCTDFDAQTWLSSALTSIDTCISGAADLNVTDFITPIKCQNVSKMISNCLAINGGFLEEGVKSGKMGMENRNGFPIWVSRGDRKLLLQSAAKLRANLVVAKDGSGNFRSVQAAINAAARRRRKGRFVIYVKRGVYRENIEVGTDNVNLMLVGDGMRFTVISGGRSVAAGFTTFSSATAGIQGLAFIARGIAFVNTAGPRMGQAVALRSSSDLSVFHRCSFQGYQDTLMVLSQRQFYKQCYIYGTIDFIFGNAAVVLQNCLIYVRRPLKGQVNVITAQGREDPFQNSGISIHNSQIRAAPDLRPIIGSVKTYLGRPWKKYSRAVIMRSYIDTLVSPMGWLAWQSSKFAQDTLYYGEYRNFGPRASTRHRVRWPGFHVIKSPNVASKFTVGRLIAGQTWLPATGVPFKLGL 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8224695 8227071 + Sed0008762.1 Sed07g1117 719981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1117 536 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 181 IPR035513 -
Sed07g1117 536 NCBIfam pectinesterase inhibitor domain 7 180 IPR006501 GO:0004857(InterPro)
Sed07g1117 536 CDD PMEI-like_3 36 183 - -
Sed07g1117 536 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 182 IPR035513 -
Sed07g1117 536 Gene3D - 217 536 IPR012334 -
Sed07g1117 536 SMART PMEI_2 28 179 IPR006501 GO:0004857(InterPro)
Sed07g1117 536 Pfam Plant invertase/pectin methylesterase inhibitor 32 179 IPR006501 GO:0004857(InterPro)
Sed07g1117 536 FunFam Pectinesterase 217 536 - -
Sed07g1117 536 PANTHER PECTINESTERASE 9 527 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed07g1117 536 Pfam Pectinesterase 223 521 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed07g1117 536 ProSitePatterns Pectinesterase signature 2. 368 377 IPR033131 -
Sed07g1117 536 SUPERFAMILY Pectin lyase-like 220 535 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1117 Sed-Chr7:8224695 Sed12g0271 Sed-Chr12:1549143 3.60E-133 dispersed
Sed07g1117 Sed-Chr7:8224695 Sed07g1118 Sed-Chr7:8229726 2.60E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1117 K01051 - csv:101213944 843.958