Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1118 ATGGAGAAAAATTTTAAAGTTCTGTTTTTCCTTCAATTCTTTTTGCTATCTTCTTTAGCCTTTTCCAAACATCCCTCTAATGGAATTGATTGGTGGTGCAAAAAAACCACATACCCCCAAACCTGCAAGTATTTCTTCAGCCATGGAAACAAGGCAGCTCCCAAAGACATGCCCGAGTTCAAGAAAATGGCGATCCGATTTGCCATGGAGCGAGCCTCAAGCGCCGAGAGCCACGCAAAGGGTGTCGGTTCGATGTGTCGAAATGGAAAGGAAAGAGCTGCTTGGGCTGACTGCTTGAAGCTCTACCAAAACACCATATTTCAGCTCAACCATACTCTAGATTCCTATACCAAATACACGGAGTTCGACATCCAAACCTGGCTCAGTACTGCCCTAACCAACCTTGAGACGTGCCGGACTGGGTTCGCTGAGCTTAACGTCTCGAACAACGTATTGCCACTGATCACGTCGAACAATGTCACAGAGCTGATAAGTAACAGCTTGGCAGTTAACAATGATTCAGCTTGGCAGGGGAAAGAGAGCTATAAACATGGATTTCCTAGTTGGGTTTCGGGTGGGGAGAGGAAGCTGCTGCAGTCGTCTTCGATGACGGCGGACCTTGTGGTGGCTCGGGATGGATCGGGGGACTTTAGGACGGTTGCAGCCGCTCTAGAGGAGGCTGGAAAGAGGAAGAGAGATGGGAGATTTGTTATACAAGTAAAGAGAGGGGTTTATGAAGAAAACATTGAGATTGGGAATAAGATGAAGAATATAATGTTGGTTGGAGATGGAATGAGATATACATTCATTACTGGTAATAGAAGTGTTGGAGGAGGCTTCACCACTTTCAATAGCGCTACTGTTGCGGTGACTGGAGAAGGATTCATAGCTCGTGGCATCACATTCCGAAACACAGCAGGTCCCGAAAACCACCAAGCAGTAGCTCTGCGATCGGGCGCAGATCTCTCGGTGTTCTACCGCTGCGCCTTCGAAGGCTATCAAGACACACTCTACGTCCACTCGCAAAGACAATTCTACAAAGAGTGCTACATTTACGGAACCGTCGATTTCATCTTCGGCAATGCAGCCGTGGTTCTTCAGAACTGCATGATCTACGCAAGAAAACCAATGAACGGCCAGAAAAACGCAGTCACGGCTCAAGGACGAACCGACCGGAATCAAAACACCGGGATTTCGATCCACAACTCGCGGGTGATGGCCGCGGACGATCTAAAACAAGTGGAGGGGTCTGTGAAAACCTACTTGGGAAGGCCATGGAAGGAGTACTCTAGGACGGTTTTCATGAAAAGTTACCTGGACGGTCTGGTTGAACCGGCGGGTTGGTTGGAGTGGGATGGTGAGTTTGCATTGAGTAGTTTGTTTTATGGTGAGTTTAAGAATGTTGGACCGGGTTCTTCGACGAGCCAAAGGGTTAAGTGGAAAGGTTACCATGTAATGAGTAATGAAACAGAGGCTTTGGAGTTTTCTGTTCAGAGTTTCATTGCTGCCCAATCTTGGCTTCCAGGAACACAAGTTCCATTTGTTCCTGGACTTTAG 1557 47.53 MEKNFKVLFFLQFFLLSSLAFSKHPSNGIDWWCKKTTYPQTCKYFFSHGNKAAPKDMPEFKKMAIRFAMERASSAESHAKGVGSMCRNGKERAAWADCLKLYQNTIFQLNHTLDSYTKYTEFDIQTWLSTALTNLETCRTGFAELNVSNNVLPLITSNNVTELISNSLAVNNDSAWQGKESYKHGFPSWVSGGERKLLQSSSMTADLVVARDGSGDFRTVAAALEEAGKRKRDGRFVIQVKRGVYEENIEIGNKMKNIMLVGDGMRYTFITGNRSVGGGFTTFNSATVAVTGEGFIARGITFRNTAGPENHQAVALRSGADLSVFYRCAFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARKPMNGQKNAVTAQGRTDRNQNTGISIHNSRVMAADDLKQVEGSVKTYLGRPWKEYSRTVFMKSYLDGLVEPAGWLEWDGEFALSSLFYGEFKNVGPGSSTSQRVKWKGYHVMSNETEALEFSVQSFIAAQSWLPGTQVPFVPGL 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8229726 8232073 + Sed0018821.1 Sed07g1118 719982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1118 518 SMART PMEI_2 24 170 IPR006501 GO:0004857(InterPro)
Sed07g1118 518 PANTHER PECTINESTERASE 13 508 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed07g1118 518 Pfam Plant invertase/pectin methylesterase inhibitor 29 170 IPR006501 GO:0004857(InterPro)
Sed07g1118 518 Pfam Pectinesterase 206 503 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed07g1118 518 Gene3D - 200 518 IPR012334 -
Sed07g1118 518 FunFam Pectinesterase 200 518 - -
Sed07g1118 518 SUPERFAMILY Pectin lyase-like 203 517 IPR011050 -
Sed07g1118 518 NCBIfam pectinesterase inhibitor domain 1 172 IPR006501 GO:0004857(InterPro)
Sed07g1118 518 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 172 IPR035513 -
Sed07g1118 518 CDD PMEI-like_3 31 172 - -
Sed07g1118 518 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Sed07g1118 518 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 173 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0024 Sed-Chr1:357687 Sed07g1118 Sed-Chr7:8229726 1.80E-84 dispersed
Sed01g3720 Sed-Chr1:66293453 Sed07g1118 Sed-Chr7:8229726 1.20E-199 dispersed
Sed02g1571 Sed-Chr2:51316048 Sed07g1118 Sed-Chr7:8229726 2.90E-148 dispersed
Sed07g1118 Sed-Chr7:8229726 Sed12g0271 Sed-Chr12:1549143 1.10E-150 dispersed
Sed07g1117 Sed-Chr7:8224695 Sed07g1118 Sed-Chr7:8229726 2.60E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1118 K01051 - csv:101211449 875.159